Co-expression analysis

Gene ID Os03g0586500
Gene name
Homology with ArabidopsisSimilar to At5g22550: unknown protein (HF=2e-1)
Module size 6 genes
NF 0.66
%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.92Os03g0586500AK068097.1-Conserved hypothetical protein2e-1At5g22550unknown proteinO.I.H.G.S.X.
0.7391.10.92Os06g0476200AK065566.1-Phosphoglucomutase precursor (EC 5.4.2.2)5e-2At1g70820phosphoglucomutase, putative / glucose phosphomutase, putativeO.I.H.G.S.X.
0.7391.10.94Os05g0589200AK068666.1-RNA polymerase, sigma subunit family protein3e-1At1g19930kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.5573.70.93Os03g0265900AK120374.1-Conserved hypothetical protein6e+0At5g11910esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.5371.30.93Os11g0533100AK120240.1-DEAD/DEAH box helicase, N-terminal domaincontaining protein2e-15At3g02060DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.5068.00.92Os08g0139100AK099590.1-DAG protein, chloroplast precursor7e-44At1g11430plastid developmental protein DAG, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.998.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.997.6GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1251GO:0006352Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.Link to AmiGO
0.0591GO:0006260The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.Link to AmiGO
0.0491GO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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