CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0563300

Gene name
Homology with Arabidopsis Similar to At5g45930: CHLI2 (MAGNESIUM CHELATASE I2) (HF=1e-31)

Module size 10 genes

NF 0.41

%ile 49.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 0.84 Os03g0563300 AK070720.1 - Magnesium-chelatase subunit chlI, chloroplastprecursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)(Protein CS/CH-42) 1e-31 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) O.I. H.G. S.X.
0.75 91.9 0.91 Os05g0232200 AK071646.1 - Conserved hypothetical protein 3e+0 At5g15190 unknown protein O.I. H.G. S.X.
0.57 77.0 0.92 Os05g0488600 9633.m03832 - Myb, DNA-binding domain containing protein 2e-25 At3g04030 myb family transcription factor O.I. H.G. S.X.
0.46 60.9 0.93 Os10g0572100 AK073002.1 - Protein of unknown function UPF0005 family protein 3e-4 At5g46610 unknown protein O.I. H.G. S.X.
0.38 46.9 0.89 Os02g0697900 AK119485.1 - Hypothetical protein 4e-27 At1g32060 PRK (PHOSPHORIBULOKINASE) O.I. H.G. S.X.
0.36 44.0 0.89 Os10g0356366 CR288737 - - 3e-30 Atcg00510 - O.I. H.G. S.X.
0.33 38.8 0.89 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) O.I. H.G. S.X.
0.29 31.1 0.94 Os12g0292900 AK064818.1 - ATP-binding region, ATPase-like domain containingprotein 5e-6 At1g67840 CSK (CHLOROPLAST SENSOR KINASE) O.I. H.G. S.X.
0.24 22.4 0.89 Os08g0130400 AK065929.1 - Hypothetical protein 9e-1 At1g30520 AAE14 (Acyl-Activating Enzyme 14) O.I. H.G. S.X.
0.23 21.2 0.88 Os04g0462300 AK109651.1 - Conserved hypothetical protein 4e-2 At3g25805 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.6 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.7 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.8 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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