CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0452600

Gene name
Homology with Arabidopsis Similar to At5g45940: atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) (HF=9e+0)

Module size 9 genes

NF 0.30

%ile 32.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.98 Os03g0452600 9631.m03346 - - 9e+0 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) O.I. H.G. S.X.
0.50 68.0 0.98 Os01g0909300 9629.m06763 - Conserved hypothetical protein 2e-1 At3g06780 glycine-rich protein O.I. H.G. S.X.
0.36 44.0 0.98 Os10g0154200 AK069896.1 - Hypothetical protein 4e-1 At5g13410 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.31 34.5 0.99 Os06g0252000 9634.m01415 - - 2e+0 At2g31720 DNA binding O.I. H.G. S.X.
0.28 31.1 0.98 Os06g0162100 9634.m00598 - Protein of unknown function DUF569 family protein 2e+0 At3g02000 ROXY1 O.I. H.G. S.X.
0.24 22.4 0.98 Os01g0213700 NM_188428.1 - Conserved hypothetical protein 1e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. H.G. S.X.
0.22 19.4 0.98 Os05g0502700 9633.m03971 - - 1e-1 At1g22890 unknown protein O.I. H.G. S.X.
0.21 17.9 0.99 Os06g0552000 9634.m03396 - - 6e-2 At1g26970 protein kinase, putative O.I. H.G. S.X.
0.19 15.1 0.98 Os03g0703700 9631.m04847 - - 2e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.4 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.8 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage