Co-expression analysis

Gene ID Os03g0413400
Gene name
Homology with ArabidopsisSimilar to At2g22640: BRK1 (BRICK1) (HF=2e-1)
Module size 6 genes
NF 0.07
%ile 5.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.91Os03g0413400BX899056-Glycosyl transferase, family 8 protein2e-1At2g22640BRK1 (BRICK1)O.I.H.G.S.X.
0.2117.90.92Os03g0242200AK071529.1-Ras GTPase family protein9e-16At5g09910ATP binding / GTP binding / transcription factor bindingO.I.H.G.S.X.
0.105.70.91Os09g0559800AK071542.1-Transporter-like protein2e-7At3g13050transporter-relatedO.I.H.G.S.X.
0.073.70.91Os04g0600400AK072894.1-Conserved hypothetical protein6e-1At2g35470unknown proteinO.I.H.G.S.X.
0.052.50.92Os06g0323401AK069903.1--6e-63At5g47200ATRAB1AO.I.H.G.S.X.
0.031.40.92Os06g0728600CB630800-Calcium-binding EF-hand domain containing protein5e-1At1g20760calcium-binding EF hand family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.599.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.098.4GSM100446Rice Bala 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
11.098.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM174886F FR13 4 dpi rep 1 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO
8.897.8GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.697.5GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.597.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM149410Rice Azucena 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
7.197.4GSM174889H FR13 4 dpi rep 2 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0871GO:0016051The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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