| Gene ID | Os03g0400800 |
| Gene name | |
| Homology with Arabidopsis | Similar to At1g74360: leucine-rich repeat transmembrane protein kinase, putative (HF=4e-5) |
| Module size | 24 genes |
| NF | 0.30 |
| %ile | 31.2 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.94 | 99.4 | 0.94 | Os03g0400800 | NM_184610.1 | - | Protein prenyltransferase domain containingprotein | 4e-5 | At1g74360 | leucine-rich repeat transmembrane protein kinase, putative | O.I. | H.G. | S.X. | |
| 0.42 | 53.9 | 0.96 | Os04g0465800 | AK064701.1 | - | - | 6e-1 | At2g35640 | hydroxyproline-rich glycoprotein family protein | O.I. | H.G. | S.X. | |
| 0.38 | 46.9 | 0.98 | Os07g0120700 | AK101981.1 | - | ARM repeat fold domain containing protein | 3e-1 | At1g51600 | TIFY2A | O.I. | H.G. | S.X. | |
| 0.37 | 45.0 | 0.96 | Os03g0247500 | AK059508.1 | - | Hypothetical protein | 2e+0 | At4g14342 | pre-mRNA splicing factor 10 kDa subunit, putative | O.I. | H.G. | S.X. | |
| 0.37 | 45.0 | 0.97 | Os07g0564800 | AK100860.1 | - | Protein of unknown function DUF707 family protein | 3e-19 | At1g11170 | unknown protein | O.I. | H.G. | S.X. | |
| 0.36 | 44.0 | 0.97 | Os01g0910200 | AK070012.1 | - | Hypothetical protein | 1e+0 | At5g59470 | PQ-loop repeat family protein / transmembrane family protein | O.I. | H.G. | S.X. | |
| 0.34 | 40.0 | 0.98 | Os11g0101200 | AK064386.1 | - | CCT domain containing protein | 3e-1 | At3g11100 | transcription factor | O.I. | H.G. | S.X. | |
| 0.34 | 40.0 | 0.98 | Os01g0531200 | NM_193184.1 | - | - | 3e-1 | At1g72080 | unknown protein | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | 0.97 | Os07g0238800 | AK106355.1 | - | Hypothetical protein | 1e+0 | At5g63150 | unknown protein | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | 0.98 | Os01g0324200 | CB684860 | - | SWIM Zn-finger domain containing protein | 2e+0 | At1g71200 | DNA binding / transcription factor | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | 0.97 | Os08g0375800 | AK101199.1 | - | PPR repeat containing protein | 3e-1 | At5g40410 | - | O.I. | H.G. | S.X. | |
| 0.30 | 32.7 | 0.98 | Os10g0518900 | AK070764.1 | - | DNA repair protein rad10 family protein | 2e-1 | At4g01050 | hydroxyproline-rich glycoprotein family protein | O.I. | H.G. | S.X. | |
| 0.30 | 32.7 | 0.96 | Os03g0422800 | AK101473.1 | - | Protein kinase domain containing protein | 1e+0 | Atmg00740 | - | O.I. | H.G. | S.X. | |
| 0.28 | 31.1 | 0.96 | Os02g0592600 | AK099683.1 | - | Copper amine oxidase family protein | 6e-1 | At4g33020 | ZIP9 | O.I. | H.G. | S.X. | |
| 0.27 | 27.5 | 0.97 | Os03g0752200 | CR287940 | - | AtSPO11-1 | 2e-6 | At3g13170 | ATSPO11-1 | O.I. | H.G. | S.X. | |
| 0.27 | 27.5 | 0.96 | Os05g0337500 | CB640460 | - | Conserved hypothetical protein | 3e-1 | At1g63310 | - | O.I. | H.G. | S.X. | |
| 0.26 | 25.6 | 0.96 | Os04g0534100 | AK103012.1 | - | Arabidopsis thaliana protein of unknown functionDUF821 family protein | 1e-12 | At1g63420 | - | O.I. | H.G. | S.X. | |
| 0.25 | 24.1 | 0.97 | Os08g0199000 | AK065993.1 | - | Cyclin-like F-box domain containing protein | 4e-1 | At5g27690 | heavy-metal-associated domain-containing protein | O.I. | H.G. | S.X. | |
| 0.24 | 22.4 | 0.96 | Os07g0231900 | AK105271.1 | - | Peptidase, trypsin-like serine and cysteineproteases domain containing protein | 2e-1 | At5g42990 | UBC18 (ubiquitin-conjugating enzyme 18) | O.I. | H.G. | S.X. | |
| 0.22 | 19.4 | 0.97 | Os05g0153400 | AK108071.1 | - | TPR-like domain containing protein | 9e-4 | At5g16860 | pentatricopeptide (PPR) repeat-containing protein | O.I. | H.G. | S.X. | |
| 0.21 | 17.9 | 0.97 | Os03g0822100 | AK059713.1 | - | BED finger domain containing protein | 4e-1 | At2g43010 | PIF4 (phytochrome interacting factor 4) | O.I. | H.G. | S.X. | |
| 0.21 | 17.9 | 0.96 | Os02g0101600 | CB967135 | - | SKP1 component family protein | 2e-17 | At5g42190 | ASK2 (ARABIDOPSIS SKP1-LIKE 2) | O.I. | H.G. | S.X. | |
| 0.17 | 12.6 | 0.96 | Os08g0154000 | AK063541.1 | - | O-methyltransferase, family 3 protein | 2e+0 | At3g62000 | O-methyltransferase family 3 protein | O.I. | H.G. | S.X. | |
| 0.15 | 10.3 | 0.97 | Os06g0709300 | AK108588.1 | - | Hypothetical protein | 3e+0 | At5g55570 | unknown protein | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 15.4 | 98.7 | GSM422676 | Control | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 14.6 | 98.6 | GSM422672 | Drought | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 13.0 | 98.4 | GSM377075 | Genomic DNA - 45 day old leaf sample - mutant g650 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 11.2 | 98.2 | GSM377072 | Genomic DNA - 45 day old leaf sample - mutant d1137 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.7 | 98.1 | GSM159172 | Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) | GSE6908 | Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile | |
| 10.3 | 98.1 | GSM377084 | Genomic DNA - 45 day old leaf sample - mutant f1856 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.1 | 98.0 | GSM377070 | Genomic DNA - 45 day old leaf sample - mutant d1 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.9 | 98.0 | GSM377073 | Genomic DNA - 45 day old leaf sample - mutant d2943 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.8 | 98.0 | GSM377081 | Genomic DNA - 45 day old leaf sample - mutant g7534 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.7 | 98.0 | GSM377074 | Genomic DNA - 45 day old leaf sample - mutant g282 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| SF | Genes | GO ID | Process Name | Link to AmiGO |
|---|---|---|---|---|
| 0.054 | 1 | GO:0006265 | The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |  |
| 0.050 | 1 | GO:0006259 | The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | |
| 0.032 | 1 | GO:0006281 | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
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