Co-expression analysis

Gene ID Os03g0397700
Gene name
Homology with ArabidopsisSimilar to At1g53730: SRF6 (STRUBBELIG-RECEPTOR FAMILY 6) (HF=1e-3)
Module size 7 genes
NF 0.12
%ile 10.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.90Os03g0397700AK111635.1-Serine/threonine protein kinase-like protein(Strubbelig receptor family 7)1e-3At1g53730SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)O.I.H.G.S.X.
0.2321.20.90Os02g0224800AK066213.1-Ndr family protein6e-17At5g56750Ndr family proteinO.I.H.G.S.X.
0.2016.50.88Os04g0243700AK059146.1-Zn-finger, RING domain containing protein8e-2At2g25409unknown proteinO.I.H.G.S.X.
0.1813.70.90Os03g0116900AK100255.1-ARM repeat fold domain containing protein5e-2At1g01830armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.
0.084.20.90Os05g0582100AK120492.1-Conserved hypothetical protein1e-21At5g46340O-acetyltransferase-relatedO.I.H.G.S.X.
0.073.70.91Os03g0237600AK066517.1-MAP65/ASE1 family protein5e-1At2g01910ATMAP65-6O.I.H.G.S.X.
0.063.00.90Os04g0641400AK062620.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-1At2g14700unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.099.2GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
16.698.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.997.0GSM174885B FR13 3 dpi rep 1 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO
5.296.7GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.596.3GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.496.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.396.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.296.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.196.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM159173Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2001GO:0030154The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage