CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0390400

Gene name
Homology with Arabidopsis Similar to At1g22450: COX6B (CYTOCHROME C OXIDASE 6B) (HF=7e-37)

Module size 6 genes

NF 0.63

%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os03g0390400 AB025187.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 7e-37 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0713400 AK058713.1 - NADH-ubiquinone oxidoreductase 75 kDa subunit,mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)(Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complexI subunit) 7e-92 At5g37510 EMB1467 (embryo defective 1467) O.I. H.G. S.X.
0.61 81.2 0.98 Os08g0431500 AK058993.1 - Conserved hypothetical protein 3e-20 At4g16450 unknown protein O.I. H.G. S.X.
0.56 76.3 0.98 Os12g0169700 AK103904.1 - Ferripyochelin-binding protein-like 8e-16 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.50 68.0 0.98 Os08g0556600 AK121358.1 - Conserved hypothetical protein 2e-8 At3g62790 NADH-ubiquinone oxidoreductase-related O.I. H.G. S.X.
0.38 46.9 0.98 Os05g0301700 AK070578.1 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 96.5 GSM278853 KT95-418-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.5 96.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.5 95.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.4 95.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.1 94.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.9 94.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.7 94.1 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
2.6 93.8 GSM278854 KT95-418-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
2.6 93.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0006123 The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
0.222 1 GO:0009060 The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
0.200 1 GO:0006120 The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage