CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0386000

Gene name
Homology with Arabidopsis Similar to At1g78070: - (HF=3e-5)

Module size 6 genes

NF 0.56

%ile 75.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.80 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - O.I. H.G. S.X.
0.50 68.0 0.80 Os03g0289800 AK069008.1 - Isopenicillin N synthase family protein 2e-5 At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.50 68.0 0.86 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.43 55.4 0.80 Os09g0455300 AK070458.1 - Symbiotic ammonium transporter 1e-5 At3g50330 HEC2 (HECATE 2) O.I. H.G. S.X.
0.40 51.1 0.84 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.36 44.0 0.81 Os07g0686600 AK108527.1 - VQ domain containing protein 6e-1 At2g40220 ABI4 (ABA INSENSITIVE 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.8 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.3 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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