Co-expression analysis

Gene ID Os03g0370600
Gene name
Homology with ArabidopsisSimilar to At3g05890: RCI2B (RARE-COLD-INDUCIBLE 2B) (HF=2e-2)
Module size 6 genes
NF 0.59
%ile 80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.97Os03g0370600CA766241-Clt12e-2At3g05890RCI2B (RARE-COLD-INDUCIBLE 2B)O.I.H.G.S.X.
0.9198.90.97Os12g0621500AK111785.1-IRE5e-44At5g62310IRE (INCOMPLETE ROOT HAIR ELONGATION)O.I.H.G.S.X.
0.5068.00.99Os06g0607900AK070879.1-GRAM domain containing protein3e+0At5g66930unknown proteinO.I.H.G.S.X.
0.4660.90.98Os03g0300500AK070513.1-Pectinesterase (EC 3.1.1.11) (Fragment)1e+0At3g49580LSU1 (RESPONSE TO LOW SULFUR 1)O.I.H.G.S.X.
0.4458.10.98Os07g0561900AK109697.1-Conserved hypothetical protein5e+0At4g24026unknown proteinO.I.H.G.S.X.
0.3541.70.97Os12g0574000AK069006.1-Amino acid/polyamine transporter II family protein6e-2At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.599.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.998.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.697.8GSM429983Rice mutant phoenix (pho) panicle rep1GSE17194Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicleLink to GEO
7.997.6GSM154937Root_tZ-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in riceLink to GEO
7.797.6GSM429982Rice wild-type panicle rep1GSE17194Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicleLink to GEO
7.697.5GSM154938Root_tZ-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
7.597.5GSM154833Root_tZ-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
5.997.0GSM154944Root_tZ-treatment_120min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
5.997.0GSM154942Root_tZ-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
5.696.9GSM159212Seed (S2, 3 - 4 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0019722A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response.Link to AmiGO
0.2861GO:0048015A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response.Link to AmiGO
0.2221GO:0010152The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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