CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0341300

Gene name
Homology with Arabidopsis Similar to At5g13170: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (HF=4e-2)

Module size 6 genes

NF 0.70

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.77 Os03g0341300 9631.m02223 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) O.I. H.G. S.X.
0.80 94.6 0.84 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.67 87.2 0.77 Os05g0206000 AK107740.1 - Hypothetical protein 3e-1 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.67 87.2 0.86 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.50 68.0 0.78 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - O.I. H.G. S.X.
0.44 58.1 0.85 Os01g0138500 AK073435.1 - Protein of unknown function DUF789 family protein 7e-1 At5g49220 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.2	0.73	Os12g0153200	AK108198.1	-	Hypothetical protein	1e-1	At4g05070	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.68	Os05g0211100	AK107185.1	-	Cytochrome P450 51 (EC 1.14.13.70) (CYPLI)(P450-LIA1) (Obtusifoliol 14-alpha demethylase)	3e-3	At5g04330	cytochrome P450, putative / ferulate-5-hydroxylase, putative	O.I.	H.G.	S.X.
0.42	53.9	0.74	Os05g0457200	9633.m03549	-	Protein phosphatase-2C	2e-7	At1g07430	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.40	51.1	0.76	Os05g0130100	CB634890	-	Protein of unknown function DUF26 domaincontaining protein	2e-5	At5g40380	protein kinase family protein	O.I.	H.G.	S.X.
0.38	46.9	0.76	Os02g0191600	9630.m00899	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	1e-1	At2g04038	AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)	O.I.	H.G.	S.X.
0.35	41.7	0.80	Os02g0824500	AK111296.1	-	-	2e-3	At3g48940	remorin family protein	O.I.	H.G.	S.X.
0.31	34.5	0.81	Os07g0154100	AK119780.1	-	The start codon is not identified.	3e-4	At3g14440	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	O.I.	H.G.	S.X.
0.30	32.7	0.74	Os01g0954000	AK062729.1	-	NADPH-dependent FMN reductase family protein	2e+0	At4g23690	disease resistance-responsive family protein / dirigent family protein	O.I.	H.G.	S.X.
0.30	32.7	0.77	Os03g0289800	AK069008.1	-	Isopenicillin N synthase family protein	2e-5	At5g05600	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.29	31.1	0.68	Os01g0714800	AK108555.1	-	WRKY transcription factor 26	4e-2	At5g26170	WRKY50	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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