CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0341300

Gene name
Homology with Arabidopsis Similar to At5g13170: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (HF=4e-2)

Module size 6 genes

NF 0.70

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.77 Os03g0341300 9631.m02223 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) O.I. H.G. S.X.
0.80 94.6 0.84 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.67 87.2 0.77 Os05g0206000 AK107740.1 - Hypothetical protein 3e-1 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.67 87.2 0.86 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.50 68.0 0.78 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - O.I. H.G. S.X.
0.44 58.1 0.85 Os01g0138500 AK073435.1 - Protein of unknown function DUF789 family protein 7e-1 At5g49220 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	94.6	0.77	Os03g0341300	9631.m02223	-	MtN3 and saliva related transmembrane proteinfamily protein	4e-2	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	O.I.	H.G.	S.X.
0.80	94.6	0.84	Os06g0147000	AK120978.1	-	Conserved hypothetical protein	3e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.
0.67	87.2	0.77	Os05g0206000	AK107740.1	-	Hypothetical protein	3e-1	At2g04520	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.
0.67	87.2	0.86	Os01g0284900	AK106618.1	-	Conserved hypothetical protein	8e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.
0.50	68.0	0.78	Os03g0386000	AK072984.1	-	WD domain protein-like	3e-5	At1g78070	-	O.I.	H.G.	S.X.
0.44	58.1	0.85	Os01g0138500	AK073435.1	-	Protein of unknown function DUF789 family protein	7e-1	At5g49220	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.6	98.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.17949.1.A1_at, orthologous to the query gene, Os03g0341300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 91.1 Zm.17949.1.A1_at At5g13170 - - 2e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) O.I. H.G. S.X.
0.40 48.5 Zm.9111.1.A1_a_at At5g13170 - - 4e-1 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.37 42.3 Zm.13199.1.S1_at At5g13170 hypothetical protein LOC100191826 - 2e-7 At3g17465 RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) O.I. H.G. S.X.
0.34 37.2 Zm.15495.2.S1_at At5g13170 hypothetical protein LOC100194089 - 2e-22 At1g67430 60S ribosomal protein L17 (RPL17B) O.I. H.G. S.X.
0.31 31.6 Zm.17166.1.A1_at At5g13170 - - 4e+0 At5g65730 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. H.G. S.X.
0.31 31.6 Zm.9861.1.A1_at At5g13170 hypothetical protein LOC100275244 - 5e+0 At1g60060 unknown protein O.I. H.G. S.X.
0.30 29.8 Zm.5453.1.A1_at At5g13170 Hypothetical protein LOC100217027 - 1e-16 At2g27040 AGO4 (ARGONAUTE 4) O.I. H.G. S.X.
0.28 28.1 Zm.6071.1.A1_at At5g13170 - - 4e-5 At2g45620 nucleotidyltransferase family protein O.I. H.G. S.X.
0.25 21.3 Zm.5163.1.S1_at At5g13170 gda-1 - 7e-20 At3g27090 - O.I. H.G. S.X.
0.25 21.3 Zm.16860.1.A1_at At5g13170 - - 4e-4 At1g79750 ATNADP-ME4 (NADP-malic enzyme 4) O.I. H.G. S.X.
0.22 16.9 Zm.9248.1.A1_at At5g13170 hypothetical protein LOC100191194 - 2e+0 At4g25150 acid phosphatase, putative O.I. H.G. S.X.
0.22 16.9 Zm.3983.2.A1_at At5g13170 - - 8e-1 At3g60510 enoyl-CoA hydratase/isomerase family protein O.I. H.G. S.X.
0.22 16.9 Zm.16783.2.A1_at At5g13170 - - 1e-1 At3g25573 unknown protein O.I. H.G. S.X.
0.22 16.9 Zm.9238.1.A1_at At5g13170 - - 5e-2 At2g23320 WRKY15 O.I. H.G. S.X.
0.20 14.2 Zm.9236.1.A1_at At5g13170 - - 8e-2 At3g01860 unknown protein O.I. H.G. S.X.
0.16 9.4 Zm.1462.1.S1_at At5g13170 hypothetical protein LOC100276194 - 1e+0 At5g41760 nucleotide-sugar transporter family protein O.I. H.G. S.X.
0.15 8.6 ZmAffx.957.1.S1_at At5g13170 - - 3e+0 At2g40995 - O.I. H.G. S.X.
0.14 7.7 Zm.18508.1.S1_at At5g13170 uclacyanin-2 - 5e-1 At1g25300 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.76	91.1	Zm.17949.1.A1_at	At5g13170	-	-	2e-2	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	O.I.	H.G.	S.X.
0.40	48.5	Zm.9111.1.A1_a_at	At5g13170	-	-	4e-1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.
0.37	42.3	Zm.13199.1.S1_at	At5g13170	hypothetical protein LOC100191826	-	2e-7	At3g17465	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	O.I.	H.G.	S.X.
0.34	37.2	Zm.15495.2.S1_at	At5g13170	hypothetical protein LOC100194089	-	2e-22	At1g67430	60S ribosomal protein L17 (RPL17B)	O.I.	H.G.	S.X.
0.31	31.6	Zm.17166.1.A1_at	At5g13170	-	-	4e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.
0.31	31.6	Zm.9861.1.A1_at	At5g13170	hypothetical protein LOC100275244	-	5e+0	At1g60060	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	Zm.5453.1.A1_at	At5g13170	Hypothetical protein LOC100217027	-	1e-16	At2g27040	AGO4 (ARGONAUTE 4)	O.I.	H.G.	S.X.
0.28	28.1	Zm.6071.1.A1_at	At5g13170	-	-	4e-5	At2g45620	nucleotidyltransferase family protein	O.I.	H.G.	S.X.
0.25	21.3	Zm.5163.1.S1_at	At5g13170	gda-1	-	7e-20	At3g27090	-	O.I.	H.G.	S.X.
0.25	21.3	Zm.16860.1.A1_at	At5g13170	-	-	4e-4	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	O.I.	H.G.	S.X.
0.22	16.9	Zm.9248.1.A1_at	At5g13170	hypothetical protein LOC100191194	-	2e+0	At4g25150	acid phosphatase, putative	O.I.	H.G.	S.X.
0.22	16.9	Zm.3983.2.A1_at	At5g13170	-	-	8e-1	At3g60510	enoyl-CoA hydratase/isomerase family protein	O.I.	H.G.	S.X.
0.22	16.9	Zm.16783.2.A1_at	At5g13170	-	-	1e-1	At3g25573	unknown protein	O.I.	H.G.	S.X.
0.22	16.9	Zm.9238.1.A1_at	At5g13170	-	-	5e-2	At2g23320	WRKY15	O.I.	H.G.	S.X.
0.20	14.2	Zm.9236.1.A1_at	At5g13170	-	-	8e-2	At3g01860	unknown protein	O.I.	H.G.	S.X.
0.16	9.4	Zm.1462.1.S1_at	At5g13170	hypothetical protein LOC100276194	-	1e+0	At5g41760	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.
0.15	8.6	ZmAffx.957.1.S1_at	At5g13170	-	-	3e+0	At2g40995	-	O.I.	H.G.	S.X.
0.14	7.7	Zm.18508.1.S1_at	At5g13170	uclacyanin-2	-	5e-1	At1g25300	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Os03g0341300
Gene name
Homology with Arabidopsis	Similar to At5g13170: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (HF=4e-2)
Module size	6 genes
NF	0.70
%ile	92.6

Co-expression analysis

Gene ID Os03g0341300 Gene name Homology with ArabidopsisSimilar to At5g13170: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (HF=4e-2) Module size 6 genes NF 0.70 %ile 92.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os03g0341300

Gene name
Homology with Arabidopsis Similar to At5g13170: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (HF=4e-2)

Module size 6 genes

NF 0.70

%ile 92.6

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera