CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0341300

Gene name
Homology with Arabidopsis Similar to At5g13170: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (HF=4e-2)

Module size 6 genes

NF 0.70

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.77 Os03g0341300 9631.m02223 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) O.I. H.G. S.X.
0.80 94.6 0.84 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.67 87.2 0.77 Os05g0206000 AK107740.1 - Hypothetical protein 3e-1 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.67 87.2 0.86 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.50 68.0 0.78 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - O.I. H.G. S.X.
0.44 58.1 0.85 Os01g0138500 AK073435.1 - Protein of unknown function DUF789 family protein 7e-1 At5g49220 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1616748_at, orthologous to the query gene, Os03g0341300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 1616748_at At5g13170 hypothetical protein LOC100246856 - 2e-37 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) O.I. H.G. S.X.
0.92 99.0 1608604_at At5g13170 hypothetical protein LOC100260136 - 7e-24 At3g05560 60S ribosomal protein L22-2 (RPL22B) O.I. H.G. S.X.
0.67 87.9 1617878_at At5g13170 hypothetical protein LOC100258943 - 3e-85 At2g47110 UBQ6 O.I. H.G. S.X.
0.67 87.9 1607686_s_at At5g13170 similar to 60S ribosomal protein L29 - 7e-10 At3g06700 60S ribosomal protein L29 (RPL29A) O.I. H.G. S.X.
0.55 77.3 1617593_at At5g13170 hypothetical protein LOC100253716 - 7e-86 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) O.I. H.G. S.X.
0.53 75.2 1620700_at At5g13170 hypothetical protein LOC100261522 - 4e-20 At1g30230 elongation factor 1-beta / EF-1-beta O.I. H.G. S.X.
0.46 66.5 1621324_at At5g13170 - - 1e-1 At4g27000 ATRBP45C O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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