CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0341300

Gene name
Homology with Arabidopsis Similar to At5g13170: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (HF=4e-2)

Module size 6 genes

NF 0.70

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.77 Os03g0341300 9631.m02223 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At5g13170 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) O.I. H.G. S.X.
0.80 94.6 0.84 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.67 87.2 0.77 Os05g0206000 AK107740.1 - Hypothetical protein 3e-1 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.67 87.2 0.86 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.50 68.0 0.78 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - O.I. H.G. S.X.
0.44 58.1 0.85 Os01g0138500 AK073435.1 - Protein of unknown function DUF789 family protein 7e-1 At5g49220 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig11511_at, orthologous to the query gene, Os03g0341300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 74.9 Contig11511_at At5g13170 - - 8e-3 At5g46030 unknown protein O.I. H.G. S.X.
0.46 61.0 Contig19949_at At5g13170 - - 7e+0 At3g02620 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative O.I. H.G. S.X.
0.45 59.3 Contig15070_at At5g13170 - - 1e-2 At4g10810 unknown protein O.I. H.G. S.X.
0.43 56.4 Contig11440_s_at At5g13170 - - 1e+0 At1g06475 unknown protein O.I. H.G. S.X.
0.41 53.9 Contig2343_s_at At5g13170 - - 1e+0 At5g26010 catalytic/ protein serine/threonine phosphatase O.I. H.G. S.X.
0.40 53.1 Contig6751_at At5g13170 - - 1e+0 At3g04990 - O.I. H.G. S.X.
0.37 47.9 Contig5664_at At5g13170 - - 1e-2 At1g25450 KCS5 (3-KETOACYL-COA SYNTHASE 5) O.I. H.G. S.X.
0.35 45.1 Contig13538_at At5g13170 - - 2e+0 At4g36430 peroxidase, putative O.I. H.G. S.X.
0.33 42.6 Contig660_s_at At5g13170 - - 1e-37 At1g09200 histone H3 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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