Co-expression analysis

Gene ID Os03g0341000
Gene name
Homology with ArabidopsisSimilar to At4g17490: ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) (HF=6e-4)
Module size 7 genes
NF 0.59
%ile 79.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.81Os03g0341000AK111414.1-AP2 domain containing protein RAP2.2 (Fragment)6e-4At4g17490ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)O.I.H.G.S.X.
0.7793.10.85Os07g0604600AK062832.1-B12D family protein2e-2At1g06475unknown proteinO.I.H.G.S.X.
0.7189.60.85Os03g0182800AY323478.1-Ethylene responsive element binding factor3(OsERF3)5e-2At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.6787.20.87Os03g0226200U76031.1-Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b)8e+0At5g02200FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)O.I.H.G.S.X.
0.6382.70.85Os01g0185500NM_189612.1-RmlC-like cupin family protein9e-2At5g39890unknown proteinO.I.H.G.S.X.
0.5777.00.84Os03g0233900U76030.1-Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)2e+0At1g30260-O.I.H.G.S.X.
0.3644.00.85Os10g0464000AK103475.1-Hypersensitive-induced response protein2e-22At5g62740band 7 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.898.1GSM159271Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
8.097.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.597.5GSM375765gid1-3_ shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
7.397.5GSM375767gid1-3_ shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
6.497.2GSM375766gid1-3_ shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
5.997.0GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
5.296.7GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
4.796.4GSM195229EndospermGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
4.696.3GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
4.596.3GSM278855KT95-418-non-infected, biological rep3GSE11025Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infectionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g17490, orthologous to the query gene, Os03g0341000

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2319.3At4g17490827463ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.H.G.S.X.
0.3338.1At1g74930843832ORA47encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.H.G.S.X.
0.3338.1At3g10930820264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.2217.5At3g02840821225immediate-early fungal elicitor family proteinF:binding;P:response to other organism, response to ozone;C:unknown;POO.I.H.G.S.X.
0.2014.4At4g34410829591RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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