CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0333400

Gene name
Homology with Arabidopsis Similar to At3g03150: unknown protein (HF=7e+0)

Module size 6 genes

NF 0.65

%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.96 Os03g0333400 AK120545.1 - Conserved hypothetical protein 7e+0 At3g03150 unknown protein O.I. H.G. S.X.
0.80 94.6 0.97 Os07g0212200 AK071575.1 - MRNA-binding protein (Fragment) 6e-20 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) O.I. H.G. S.X.
0.77 93.1 0.96 Os06g0705100 AK119552.1 - Conserved hypothetical protein 1e-8 At4g02530 chloroplast thylakoid lumen protein O.I. H.G. S.X.
0.73 91.1 0.96 Os05g0401100 AK067179.1 - Protein of unknown function DUF477 family protein 6e-1 At2g37580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.67 87.2 0.96 Os10g0516100 AF022731.1 - Glycine decarboxylase complex H-protein 3e-8 At1g32470 glycine cleavage system H protein, mitochondrial, putative O.I. H.G. S.X.
0.30 32.7 0.97 Os02g0750100 BI809899 - H(+)-transporting ATP synthase (EC 3.6.1.34)(Fragment) 4e+0 At1g47265 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.0 99.4 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
22.3 99.3 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
10.5 98.1 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.1 97.7 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
4.7 96.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.8 95.7 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.7 95.6 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.6 95.5 GSM429985 Rice mutant phoenix (pho) panicle rep 2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
3.4 95.2 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.0 94.6 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g03150, orthologous to the query gene, Os03g0333400

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g03150 821070 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.55 70.6 At5g16660 831528 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope;PB O.I. H.G. S.X.
0.39 48.4 At4g33670 829509 L-galactose dehydrogenase (L-GalDH) Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis O.I. H.G. S.X.
0.38 46.7 At5g54540 835542 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. H.G. S.X.
0.36 43.6 At2g42590 818859 GRF9 (GENERAL REGULATORY FACTOR 9) 14-3-3 gene. Binds calcium and displays induced structural changes. O.I. H.G. S.X.
0.34 39.8 At1g19000 838481 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO O.I. H.G. S.X.
0.28 30.3 At5g49940 835057 NFU2 (NIFU-LIKE PROTEIN 2) Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast. O.I. H.G. S.X.
0.26 24.4 At3g15690 820812 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related F:unknown;P:unknown;C:chloroplast;BOPM O.I. H.G. S.X.
0.23 19.3 At1g05850 837095 POM1 (POM-POM1) Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants. O.I. H.G. S.X.
0.18 11.4 At1g69390 843271 ATMINE1 (Arabidopsis homologue of bacterial MinE 1) Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery. O.I. H.G. S.X.
0.11 4.1 At5g10450 830909 GRF6 (G-box regulating factor 6) Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1. O.I. H.G. S.X.
0.10 3.4 At2g47400 819353 CP12-1 CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The annotation of this gene is based on article 32494. O.I. H.G. S.X.
0.05 1.1 At2g20260 816545 PSAE-2 (photosystem I subunit E-2) Encodes subunit E of photosystem I. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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