Co-expression analysis

Gene ID Os03g0333400
Gene name
Homology with ArabidopsisSimilar to At3g03150: unknown protein (HF=7e+0)
Module size 6 genes
NF 0.65
%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.96Os03g0333400AK120545.1-Conserved hypothetical protein7e+0At3g03150unknown proteinO.I.H.G.S.X.
0.8094.60.97Os07g0212200AK071575.1-MRNA-binding protein (Fragment)6e-20At3g63140CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)O.I.H.G.S.X.
0.7793.10.96Os06g0705100AK119552.1-Conserved hypothetical protein1e-8At4g02530chloroplast thylakoid lumen proteinO.I.H.G.S.X.
0.7391.10.96Os05g0401100AK067179.1-Protein of unknown function DUF477 family protein6e-1At2g37580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6787.20.96Os10g0516100AF022731.1-Glycine decarboxylase complex H-protein3e-8At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.3032.70.97Os02g0750100BI809899-H(+)-transporting ATP synthase (EC proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.099.4GSM262020Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
22.399.3GSM255762wt collar chipGSE12097antiOsLIC collar chipLink to GEO
10.598.1GSM262021Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
8.197.7GSM255763antiOsLIC collar chipGSE12097antiOsLIC collar chipLink to GEO
4.796.4GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.895.7GSM159202Inflorescence (P5, 15 - 22 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
3.795.6GSM159201Inflorescence (P5, 15 - 22 cm), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
3.695.5GSM429985Rice mutant phoenix (pho) panicle rep 2GSE17194Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicleLink to GEO
3.495.2GSM159203Inflorescence (P5, 15 - 22 cm), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
3.094.6GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g03150, orthologous to the query gene, Os03g0333400

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At3g03150821070unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.5570.6At5g16660831528unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope;PBO.I.H.G.S.X.
0.3948.4At4g33670829509L-galactose dehydrogenase (L-GalDH)Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesisO.I.H.G.S.X.
0.3846.7At5g54540835542-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.3643.6At2g42590818859GRF9 (GENERAL REGULATORY FACTOR 9)14-3-3 gene. Binds calcium and displays induced structural changes.O.I.H.G.S.X.
0.3439.8At1g19000838481myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POO.I.H.G.S.X.
0.2830.3At5g49940835057NFU2 (NIFU-LIKE PROTEIN 2)Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.O.I.H.G.S.X.
0.2624.4At3g15690820812biotin carboxyl carrier protein of acetyl-CoA carboxylase-relatedF:unknown;P:unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.2319.3At1g05850837095POM1 (POM-POM1)Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.O.I.H.G.S.X.
0.1811.4At1g69390843271ATMINE1 (Arabidopsis homologue of bacterial MinE 1)Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.O.I.H.G.S.X.
0.114.1At5g10450830909GRF6 (G-box regulating factor 6)Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.O.I.H.G.S.X.
0.103.4At2g47400819353CP12-1CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The annotation of this gene is based on article 32494.O.I.H.G.S.X.
0.051.1At2g20260816545PSAE-2 (photosystem I subunit E-2)Encodes subunit E of photosystem I.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage