Co-expression analysis

Gene ID Os03g0333400
Gene name
Homology with ArabidopsisSimilar to At3g03150: unknown protein (HF=7e+0)
Module size 6 genes
NF 0.65
%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.96Os03g0333400AK120545.1-Conserved hypothetical protein7e+0At3g03150unknown proteinO.I.H.G.S.X.
0.8094.60.97Os07g0212200AK071575.1-MRNA-binding protein (Fragment)6e-20At3g63140CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)O.I.H.G.S.X.
0.7793.10.96Os06g0705100AK119552.1-Conserved hypothetical protein1e-8At4g02530chloroplast thylakoid lumen proteinO.I.H.G.S.X.
0.7391.10.96Os05g0401100AK067179.1-Protein of unknown function DUF477 family protein6e-1At2g37580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6787.20.96Os10g0516100AF022731.1-Glycine decarboxylase complex H-protein3e-8At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.3032.70.97Os02g0750100BI809899-H(+)-transporting ATP synthase (EC 3.6.1.34)(Fragment)4e+0At1g47265unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.099.4GSM262020Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
22.399.3GSM255762wt collar chipGSE12097antiOsLIC collar chipLink to GEO
10.598.1GSM262021Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
8.197.7GSM255763antiOsLIC collar chipGSE12097antiOsLIC collar chipLink to GEO
4.796.4GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.895.7GSM159202Inflorescence (P5, 15 - 22 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
3.795.6GSM159201Inflorescence (P5, 15 - 22 cm), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
3.695.5GSM429985Rice mutant phoenix (pho) panicle rep 2GSE17194Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicleLink to GEO
3.495.2GSM159203Inflorescence (P5, 15 - 22 cm), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
3.094.6GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage