CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0308200

Gene name
Homology with Arabidopsis Similar to At5g26850: - (HF=5e-7)

Module size 7 genes

NF 0.66

%ile 88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.95 Os03g0308200 AK062228.1 - ARM repeat fold domain containing protein 5e-7 At5g26850 - O.I. H.G. S.X.
0.75 91.9 0.94 Os05g0555100 AJ272423.1 - Protein phosphatase 2A B'kappa subunit 1e+0 At5g03470 ATB' ALPHA O.I. H.G. S.X.
0.67 87.2 0.94 Os05g0526400 CR284436 - Reticulon family protein 4e+0 At3g10260 reticulon family protein O.I. H.G. S.X.
0.67 87.2 0.95 Os06g0308300 AK102553.1 - 65kD microtubule associated protein 3e-29 At5g55230 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1) O.I. H.G. S.X.
0.57 77.0 0.95 Os02g0767000 AK122109.1 - Remorin, C-terminal region domain containingprotein 1e-9 At4g36970 remorin family protein O.I. H.G. S.X.
0.55 73.7 0.94 Os12g0613700 AK121703.1 - Transcriptional factor B3 family protein 9e-52 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) O.I. H.G. S.X.
0.40 51.1 0.97 Os07g0568000 AK072783.1 - Conserved hypothetical protein 2e-2 At1g10180 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.6 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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