Co-expression analysis

Gene ID Os03g0307000
Gene name
Homology with ArabidopsisSimilar to At1g56423: unknown protein (HF=1e-7)
Module size 6 genes
NF 0.59
%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4051.10.90Os03g03070009631.m01916-Hypothetical protein1e-7At1g56423unknown proteinO.I.H.G.S.X.
0.9198.90.90Os02g0653900AK104793.1--6e-2At4g16820lipase class 3 family proteinO.I.H.G.S.X.
0.8094.60.92Os11g0163800AK105532.1-Protein of unknown function DUF793 family protein9e-1At4g08380proline-rich extensin-like family proteinO.I.H.G.S.X.
0.6181.20.91Os05g0127300AK106429.1-Cytokinin-regulated kinase 12e-2At1g78980SRF5 (STRUBBELIG-RECEPTOR FAMILY 5)O.I.H.G.S.X.
0.5777.00.92Os02g0314600AK068924.1-Peptidase A1, pepsin family protein1e+0At5g55570unknown proteinO.I.H.G.S.X.
0.3644.00.90Os01g0934100AK100995.1-C2 domain containing protein7e-1At5g62720integral membrane HPP family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.199.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.896.5GSM207562Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
4.196.0GSM207564Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
4.196.0GSM207563Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
3.895.7GSM207567Mudanjiang8 wild type control rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
3.895.7GSM207558Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
3.895.7GSM207559Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
3.795.6GSM207565Mudanjiang8 wild type control rep1GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
3.194.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.194.8GSM207560Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0441GO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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