Co-expression analysis

Gene ID Os03g0293400
Gene name
Homology with ArabidopsisSimilar to At5g01310: basic helix-loop-helix (bHLH) family protein (HF=1e-8)
Module size 7 genes
NF 0.43
%ile 54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.94Os03g0293400AK058372.1-Aprataxin (Forkhead-associated domainhistidine-triad like protein) (FHA-HIT). Splice isoform 61e-8At5g01310basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5573.70.94Os02g0290500AK065628.1-Ubiquitin domain containing protein2e-9At1g64460phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.4355.40.95Os01g0172200AK100326.1-WW/Rsp5/WWP domain containing protein1e-7At3g01540DRH1 (DEAD BOX RNA HELICASE 1)O.I.H.G.S.X.
0.4355.40.95Os12g0288600AK064558.1-Hypothetical protein3e-1At5g63350unknown proteinO.I.H.G.S.X.
0.3846.90.94Os12g0116000AK102691.1-PV723e-23At3g52850VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)O.I.H.G.S.X.
0.2625.60.94Os06g0529800AK071835.1-Zn-finger (putative), N-recognin domain containingprotein6e-5At4g23860PHD finger protein-relatedO.I.H.G.S.X.
0.2422.40.95Os04g0641000AK121416.1-RNA polymerase beta subunit domain containingprotein2e-22At3g23780NRPD2AO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.499.8GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
28.199.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.898.4GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.998.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.997.8GSM159205Inflorescence (P6, 22 - 30 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
7.797.6GSM159206Inflorescence (P6, 22 - 30 cm), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
6.997.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.297.1GSM159184Y Leaf, biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
6.097.0GSM159204Inflorescence (P6, 22 - 30 cm), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
5.997.0GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0481GO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO
0.0451GO:0016579The removal of one or more ubiquitin moieties from a protein.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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