CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0279400

Gene name
Homology with Arabidopsis Similar to At2g37500: arginine biosynthesis protein ArgJ family (HF=2e-10)

Module size 6 genes

NF 0.39

%ile 46.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.94 Os03g0279400 AK106253.1 - Arginine biosynthesis protein ArgJ family protein 2e-10 At2g37500 arginine biosynthesis protein ArgJ family O.I. H.G. S.X.
0.50 68.0 0.94 Os03g0248600 AK073611.1 - Enolase 2 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 2) (2-phospho- D-glycerate hydro-lyase 2) 5e-98 At2g36530 LOS2 O.I. H.G. S.X.
0.33 38.8 0.93 Os04g0464200 AK103582.1 - Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH) 2e-17 At3g48170 ALDH10A9 O.I. H.G. S.X.
0.33 38.8 0.94 Os06g0730600 AK070316.1 - Peptidase S9A, prolyl oligopeptidase familyprotein 8e-39 At1g50380 prolyl oligopeptidase family protein O.I. H.G. S.X.
0.31 34.5 0.94 Os01g0829800 AK101730.1 - Malate dehydrogenase precursor (EC 1.1.1.37) 6e-48 At3g47520 MDH (MALATE DEHYDROGENASE) O.I. H.G. S.X.
0.20 16.5 0.94 Os02g0525900 AK066073.1 - AMP-dependent synthetase and ligase domaincontaining protein 1e-80 At5g36880 acetyl-CoA synthetase, putative / acetate-CoA ligase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.2 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.0 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.6 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.7 97.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage