CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0278700

Gene name
Homology with Arabidopsis Similar to At1g08310: esterase/lipase/thioesterase family protein (HF=2e+0)

Module size 6 genes

NF 0.44

%ile 56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.96 Os03g0278700 9631.m01671 - Zn-finger-like, PHD finger domain containingprotein 2e+0 At1g08310 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.67 87.2 0.97 Os11g0708600 AK066096.1 - RECQL1 protein 6e-43 At1g31360 RECQL2 (ARABIDOPSIS RECQ HELICASE L2) O.I. H.G. S.X.
0.46 60.9 0.96 Os06g0315900 AK100030.1 - The start codon is not identified. 2e-1 At3g50140 unknown protein O.I. H.G. S.X.
0.40 51.1 0.97 Os10g0363100 AK061910.1 - Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) 3e-20 At4g38270 GAUT3 (Galacturonosyltransferase 3) O.I. H.G. S.X.
0.29 31.1 0.97 Os05g0290300 CB633316 - Hypothetical protein 6e+0 At4g17200 F-box family protein O.I. H.G. S.X.
0.21 17.9 0.96 Os06g0163500 AK071415.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e-28 At5g19660 S1P (SITE-1 PROTEASE) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.0 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.7 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.7 99.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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