CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0278400

Gene name
Homology with Arabidopsis Similar to At2g37550: AGD7 (HF=3e-7)

Module size 8 genes

NF 0.22

%ile 20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.93 Os03g0278400 AK070052.1 - ADP ribosylation GTPase-like protein (Fragment) 3e-7 At2g37550 AGD7 O.I. H.G. S.X.
0.46 60.9 0.94 Os02g0136800 AK070727.1 - Conserved hypothetical protein 8e-1 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.43 55.4 0.94 Os08g0203900 AK101564.1 - Conserved hypothetical protein 2e-8 At5g19980 integral membrane family protein O.I. H.G. S.X.
0.32 36.3 0.93 Os05g0573000 AK066560.1 - Hypothetical protein 4e-1 At3g09730 unknown protein O.I. H.G. S.X.
0.21 17.9 0.93 Os03g0655600 AK120778.1 - FAR1 domain containing protein 5e-1 At1g47970 unknown protein O.I. H.G. S.X.
0.16 11.3 0.93 Os11g0148400 AK066122.1 - Hypothetical protein 1e+0 At3g48480 cysteine-type peptidase O.I. H.G. S.X.
0.13 8.2 0.93 Os08g0499200 AK120828.1 - Cl- channel, voltage gated family protein 1e-65 At1g55620 CLC-F (CHLORIDE CHANNEL F) O.I. H.G. S.X.
0.09 4.9 0.94 Os10g0497800 AK120584.1 - Prolyl 4-hydroxylase, alpha subunit-like protein 3e-9 At1g20270 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.7 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.143 1 GO:0006821 The directed movement of chloride into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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