Co-expression analysis

Gene ID Os03g0271100
Gene name
Homology with ArabidopsisSimilar to At1g08540: SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) (HF=4e-3)
Module size 6 genes
NF 0.67
%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.94Os03g0271100AB095095.1-Sigma factor SIG2B4e-3At1g08540SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)O.I.H.G.S.X.
0.7793.10.93Os12g0233300AK058317.1-Histidine triad (HIT) protein family protein2e+0At1g07700thioredoxin family proteinO.I.H.G.S.X.
0.6787.20.94Os01g0142100AK065031.1-Peptidase M50 family protein1e-6At5g05740EGY2O.I.H.G.S.X.
0.6181.20.94Os11g0153700AK058576.1-Signal recognition particle 54 kDa protein,chloroplast precursor (SRP54) (54 chloroplast protein)(54CP) (FFC)2e-35At5g03940CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)O.I.H.G.S.X.
0.5068.00.94Os01g0705300AK102719.1-Conserved hypothetical protein1e-1At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.4660.90.95Os01g0558800AK068120.1-Conserved hypothetical protein8e-1At5g19300-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.698.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1251GO:0006352Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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