CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0267100

Gene name
Homology with Arabidopsis Similar to At3g46230: ATHSP17.4 (HF=6e-16)

Module size 39 genes

NF 0.34

%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.95 Os03g0267100 AK120655.1 - Conserved hypothetical protein 6e-16 At3g46230 ATHSP17.4 O.I. H.G. S.X.
0.50 68.0 0.96 Os02g0530001 9630.m03111 - - 2e+0 At3g62990 unknown protein O.I. H.G. S.X.
0.49 64.4 0.97 Os02g0795200 AK059349.1 - Conserved hypothetical protein 6e-1 At1g10140 - O.I. H.G. S.X.
0.47 62.3 0.97 Os01g0668700 AK067957.1 - Conserved hypothetical protein 6e+0 At5g05690 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) O.I. H.G. S.X.
0.44 58.1 0.97 Os06g0110400 9634.m04646 - - 3e+1 At5g09370 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.42 53.9 0.96 Os11g0639100 9639.m03865 - Hypothetical protein 4e-1 At4g09000 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) O.I. H.G. S.X.
0.42 53.9 0.97 Os08g0542800 AK121466.1 - Conserved hypothetical protein 3e-7 At1g07710 ankyrin repeat family protein O.I. H.G. S.X.
0.41 52.4 0.98 Os04g0502100 AK066956.1 - Conserved hypothetical protein 3e-1 At4g32290 unknown protein O.I. H.G. S.X.
0.41 52.4 0.98 Os04g0168100 9632.m00777 - Zn-finger, C2H2 type domain containing protein 7e-3 At2g42410 ZFP11 (ZINC FINGER PROTEIN 11) O.I. H.G. S.X.
0.40 51.1 0.97 Os04g0632400 AK068530.1 - - 1e-1 At1g76130 AMY2 (ALPHA-AMYLASE-LIKE 2) O.I. H.G. S.X.
0.40 51.1 0.97 Os03g0325800 NM_196742.1 - - 6e-4 At5g53690 unknown protein O.I. H.G. S.X.
0.40 51.1 0.97 Os11g0505000 9639.m02796 - - 2e+0 At1g62886 DNA binding O.I. H.G. S.X.
0.40 51.1 0.98 Os10g0176066 9638.m00847 - - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.39 48.3 0.97 Os03g0574100 9631.m03621 - - 1e+1 At5g34908 - O.I. H.G. S.X.
0.39 48.3 0.97 Os04g0319200 9632.m02446 - - 1e+1 At5g58375 unknown protein O.I. H.G. S.X.
0.39 48.3 0.98 Os02g0759500 AK072404.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g17300 myb family transcription factor O.I. H.G. S.X.
0.39 48.3 0.98 Os01g0299200 NM_189182.1 - - 2e-1 At1g56570 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.38 46.9 0.98 Os02g0611000 AK107511.1 - Hypothetical protein 4e+0 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.37 45.0 0.97 Os01g0119700 9629.m00210 - - 8e-1 At3g22750 protein kinase, putative O.I. H.G. S.X.
0.35 41.7 0.97 Os01g0841800 AK111196.1 - Ribonuclease II domain containing protein 1e-15 At5g02250 EMB2730 (EMBRYO DEFECTIVE 2730) O.I. H.G. S.X.
0.35 41.7 0.97 Os01g0132100 NM_184252.1 - Leucine-rich repeat, plant specific containingprotein 5e+0 At1g71780 unknown protein O.I. H.G. S.X.
0.35 41.7 0.97 Os02g0446100 AK072877.1 - Conserved hypothetical protein 8e+0 At5g15860 ATPCME (PRENYLCYSTEINE METHYLESTERASE) O.I. H.G. S.X.
0.34 40.0 0.96 Os09g0419400 9637.m02170 - - 1e+0 At1g07135 glycine-rich protein O.I. H.G. S.X.
0.34 40.0 0.97 Os01g0339500 AK066107.1 - Conserved hypothetical protein 6e-2 At3g60270 uclacyanin, putative O.I. H.G. S.X.
0.33 38.8 0.97 Os02g0640700 AK106833.1 - UAS domain containing protein 2e-1 At5g15210 ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30) O.I. H.G. S.X.
0.33 38.8 0.96 Os03g0258000 AK107444.1 - Resistance protein candidate (Fragment) 3e-4 At5g59260 lectin protein kinase, putative O.I. H.G. S.X.
0.31 34.5 0.98 Os10g0378025 NM_196167.1 - - 4e+0 At5g50915 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.31 34.5 0.97 Os04g0589300 9632.m04851 - - 1e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) O.I. H.G. S.X.
0.30 32.7 0.98 Os09g0265450 9637.m00672 - - 3e+0 At3g18570 glycine-rich protein / oleosin O.I. H.G. S.X.
0.29 31.1 0.98 Os02g0463100 9630.m02493 - - 5e-3 At4g09660 - O.I. H.G. S.X.
0.27 27.5 0.97 Os10g0408200 9638.m02293 - - 1e+0 At1g45015 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein O.I. H.G. S.X.
0.25 24.1 0.97 Os08g0368300 9636.m02778 - - 3e+0 At4g10720 ankyrin repeat family protein O.I. H.G. S.X.
0.23 21.2 0.96 Os12g0608500 AK107367.1 - Protein kinase domain containing protein 6e-6 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.23 21.2 0.97 Os12g0589400 AK119349.1 - Hypothetical protein 4e-1 At5g61440 ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5) O.I. H.G. S.X.
0.23 21.2 0.97 Os02g0593100 9630.m03643 - Copper amine oxidase family protein 8e-16 At2g42490 copper amine oxidase, putative O.I. H.G. S.X.
0.21 17.9 0.97 Os08g0161200 NM_189085.1 - - 2e+0 At3g16432 unknown protein O.I. H.G. S.X.
0.20 16.5 0.97 Os09g0494001 9637.m02805 - - 2e-1 At2g39855 unknown protein O.I. H.G. S.X.
0.19 15.1 0.96 Os08g0193700 9636.m00897 - - 4e-1 At5g47140 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.19 15.1 0.97 Os04g0583400 9632.m04794 - - 2e+0 At3g29034 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.95	Os03g0267100	AK120655.1	-	Conserved hypothetical protein	6e-16	At3g46230	ATHSP17.4	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os02g0530001	9630.m03111	-	-	2e+0	At3g62990	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.97	Os02g0795200	AK059349.1	-	Conserved hypothetical protein	6e-1	At1g10140	-	O.I.	H.G.	S.X.
0.47	62.3	0.97	Os01g0668700	AK067957.1	-	Conserved hypothetical protein	6e+0	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os06g0110400	9634.m04646	-	-	3e+1	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.42	53.9	0.96	Os11g0639100	9639.m03865	-	Hypothetical protein	4e-1	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	O.I.	H.G.	S.X.
0.42	53.9	0.97	Os08g0542800	AK121466.1	-	Conserved hypothetical protein	3e-7	At1g07710	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os04g0502100	AK066956.1	-	Conserved hypothetical protein	3e-1	At4g32290	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os04g0168100	9632.m00777	-	Zn-finger, C2H2 type domain containing protein	7e-3	At2g42410	ZFP11 (ZINC FINGER PROTEIN 11)	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os04g0632400	AK068530.1	-	-	1e-1	At1g76130	AMY2 (ALPHA-AMYLASE-LIKE 2)	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os03g0325800	NM_196742.1	-	-	6e-4	At5g53690	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os11g0505000	9639.m02796	-	-	2e+0	At1g62886	DNA binding	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os10g0176066	9638.m00847	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.39	48.3	0.97	Os03g0574100	9631.m03621	-	-	1e+1	At5g34908	-	O.I.	H.G.	S.X.
0.39	48.3	0.97	Os04g0319200	9632.m02446	-	-	1e+1	At5g58375	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os02g0759500	AK072404.1	-	Protein prenyltransferase domain containingprotein	1e+0	At5g17300	myb family transcription factor	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os01g0299200	NM_189182.1	-	-	2e-1	At1g56570	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os02g0611000	AK107511.1	-	Hypothetical protein	4e+0	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	O.I.	H.G.	S.X.
0.37	45.0	0.97	Os01g0119700	9629.m00210	-	-	8e-1	At3g22750	protein kinase, putative	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os01g0841800	AK111196.1	-	Ribonuclease II domain containing protein	1e-15	At5g02250	EMB2730 (EMBRYO DEFECTIVE 2730)	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os01g0132100	NM_184252.1	-	Leucine-rich repeat, plant specific containingprotein	5e+0	At1g71780	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os02g0446100	AK072877.1	-	Conserved hypothetical protein	8e+0	At5g15860	ATPCME (PRENYLCYSTEINE METHYLESTERASE)	O.I.	H.G.	S.X.
0.34	40.0	0.96	Os09g0419400	9637.m02170	-	-	1e+0	At1g07135	glycine-rich protein	O.I.	H.G.	S.X.
0.34	40.0	0.97	Os01g0339500	AK066107.1	-	Conserved hypothetical protein	6e-2	At3g60270	uclacyanin, putative	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os02g0640700	AK106833.1	-	UAS domain containing protein	2e-1	At5g15210	ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30)	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os03g0258000	AK107444.1	-	Resistance protein candidate (Fragment)	3e-4	At5g59260	lectin protein kinase, putative	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os10g0378025	NM_196167.1	-	-	4e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os04g0589300	9632.m04851	-	-	1e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os09g0265450	9637.m00672	-	-	3e+0	At3g18570	glycine-rich protein / oleosin	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os02g0463100	9630.m02493	-	-	5e-3	At4g09660	-	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os10g0408200	9638.m02293	-	-	1e+0	At1g45015	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os08g0368300	9636.m02778	-	-	3e+0	At4g10720	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.23	21.2	0.96	Os12g0608500	AK107367.1	-	Protein kinase domain containing protein	6e-6	At5g10530	lectin protein kinase, putative	O.I.	H.G.	S.X.
0.23	21.2	0.97	Os12g0589400	AK119349.1	-	Hypothetical protein	4e-1	At5g61440	ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)	O.I.	H.G.	S.X.
0.23	21.2	0.97	Os02g0593100	9630.m03643	-	Copper amine oxidase family protein	8e-16	At2g42490	copper amine oxidase, putative	O.I.	H.G.	S.X.
0.21	17.9	0.97	Os08g0161200	NM_189085.1	-	-	2e+0	At3g16432	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	0.97	Os09g0494001	9637.m02805	-	-	2e-1	At2g39855	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.96	Os08g0193700	9636.m00897	-	-	4e-1	At5g47140	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.19	15.1	0.97	Os04g0583400	9632.m04794	-	-	2e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.5 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
24.5	99.4	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.2	98.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9	98.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7	98.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1	98.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0010229 The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure.
0.012 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.010 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

SF	Genes	GO ID	Process Name
0.043	1	GO:0010229	The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure.
0.012	1	GO:0006952	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.010	1	GO:0006915	A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os03g0267100
Gene name
Homology with Arabidopsis	Similar to At3g46230: ATHSP17.4 (HF=6e-16)
Module size	39 genes
NF	0.34
%ile	37.7

Co-expression analysis

Gene ID Os03g0267100 Gene name Homology with ArabidopsisSimilar to At3g46230: ATHSP17.4 (HF=6e-16) Module size 39 genes NF 0.34 %ile 37.7

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0267100

Gene name
Homology with Arabidopsis Similar to At3g46230: ATHSP17.4 (HF=6e-16)

Module size 39 genes

NF 0.34

%ile 37.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays