Co-expression analysis

Gene ID	Os03g0267000
Gene name
Homology with Arabidopsis	Similar to At5g59720: HSP18.2 (heat shock protein 18.2) (HF=6e-3)
Module size	6 genes
NF	0.85
%ile	99.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.85	Os03g0267000	AU165294	-	Low molecular mass heat shock protein Oshsp18.0	6e-3	At5g59720	HSP18.2 (heat shock protein 18.2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	0.85	Os03g0277300	9631.m01656	-	Heat shock protein 70	7e-98	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	0.85	Os04g0445100	AK063700.1	-	22.7 kDa class IV heat shock protein precursor	2e+0	At1g54200	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	0.86	Os03g0245800	AB020973.1	-	-	5e-1	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	0.87	Os01g0136200	AK121025.1	-	17.7 kDa heat shock protein	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.85	Os03g0266900	D12635.1	-	Low molecular mass heat shock protein Oshsp17.3	7e-12	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
52.4	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
10.4	98.1	GSM159213	Seed (S3, 5 - 10 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
10.4	98.1	GSM159207	Seed (S1, 0 - 2 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
9.8	98.0	GSM159217	Seed (S4, 11 - 20 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
9.2	97.9	GSM159214	Seed (S3, 5 - 10 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
9.1	97.9	GSM159215	Seed (S3, 5 - 10 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
7.6	97.5	GSM159209	Seed (S1, 0 - 2 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
6.4	97.2	GSM159208	Seed (S1, 0 - 2 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
6.2	97.1	GSM159218	Seed (S4, 11 - 20 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
5.2	96.7	GSM159216	Seed (S4, 11 - 20 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.095	1	GO:0006811	The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.057	1	GO:0006813	The directed movement of potassium ions (K+) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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