Co-expression analysis

Gene ID Os03g0266900
Gene name
Homology with ArabidopsisSimilar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=7e-12)
Module size 6 genes
NF 0.64
%ile 86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.86Os03g0266900D12635.1-Low molecular mass heat shock protein Oshsp17.37e-12At1g5354017.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)O.I.H.G.S.X.
0.6079.70.83Os03g0267200AK069547.1--7e-9At5g59720HSP18.2 (heat shock protein 18.2)O.I.H.G.S.X.
0.5978.00.80Os03g0267000AU165294-Low molecular mass heat shock protein Oshsp18.06e-3At5g59720HSP18.2 (heat shock protein 18.2)O.I.H.G.S.X.
0.5573.70.80Os02g0758000AK074003.1-Low molecular weight heat shock protein precursor1e-2At4g25200ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)O.I.H.G.S.X.
0.4660.90.85Os04g0445100AK063700.1-22.7 kDa class IV heat shock protein precursor2e+0At1g54200unknown proteinO.I.H.G.S.X.
0.4660.90.86Os03g0245800AB020973.1--5e-1At5g42965nucleic acid binding / ribonuclease HO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.798.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.898.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.797.6GSM159207Seed (S1, 0 - 2 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
6.997.3GSM159213Seed (S3, 5 - 10 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
6.497.2GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM159214Seed (S3, 5 - 10 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
6.097.0GSM159217Seed (S4, 11 - 20 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
5.796.9GSM159209Seed (S1, 0 - 2 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
5.696.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0951GO:0006811The directed movement of charged atoms or small charged molecules into, out of, within or between cells.Link to AmiGO
0.0571GO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g53540, orthologous to the query gene, Os03g0266900

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g5354084178917.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.H.G.S.X.
1.00100.0At2g2950081749917.6 kDa class I small heat shock protein (HSP17.6B-CI)F:molecular_function unknown;P:response to oxidative stress, response to cyclopentenone, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMO.I.H.G.S.X.
0.9897.8At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.H.G.S.X.
0.9496.7At3g46230823768ATHSP17.4member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seedsO.I.H.G.S.X.
0.9296.0At5g12030831076AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.O.I.H.G.S.X.
0.9296.0At1g0740083725217.8 kDa class I heat shock protein (HSP17.8-CI)F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAMO.I.H.G.S.X.
0.9195.6At1g16030838174Hsp70b (heat shock protein 70B)F:ATP binding;P:protein folding, response to heat;C:cytosol, cell wall, plasma membrane, chloroplast, membrane;BOMFPVAO.I.H.G.S.X.
0.9095.1At1g74310843771ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.O.I.H.G.S.X.
0.9095.1At4g25200828623ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrialO.I.H.G.S.X.
0.8994.6At2g46240819232BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.H.G.S.X.
0.8994.6At4g12400826849stress-inducible protein, putativeF:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAVO.I.H.G.S.X.
0.8894.0At2g20560816578DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.H.G.S.X.
0.8793.5At5g5144083521823.5 kDa mitochondrial small heat shock protein (HSP23.5-M)F:molecular_function unknown;P:response to heat;C:unknown;BPOAFMO.I.H.G.S.X.
0.8693.1At2g32120817771HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2)F:ATP binding;P:protein folding, response to high light intensity, response to hydrogen peroxide, response to heat;C:cellular_component unknown;OBMFPAVO.I.H.G.S.X.
0.8693.1At5g48570834913peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPAO.I.H.G.S.X.
0.8592.4At2g26150817155ATHSFA2member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.O.I.H.G.S.X.
0.8391.4At1g5405084184317.4 kDa class III heat shock protein (HSP17.4-CIII)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMO.I.H.G.S.X.
0.8190.4At3g24500822041MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.O.I.H.G.S.X.
0.8089.8At4g27670828881HSP21 (HEAT SHOCK PROTEIN 21)chloroplast located small heat shock protein.O.I.H.G.S.X.
0.8089.8At5g3767083374615.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)F:molecular_function unknown;P:response to heat;C:unknown;BPOFAMO.I.H.G.S.X.
0.7989.1At5g59720836093HSP18.2 (heat shock protein 18.2)encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.O.I.H.G.S.X.
0.7888.6At1g30070839886SGS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFO.I.H.G.S.X.
0.7888.6At3g09350820091armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.7788.0At4g10250826616ATHSP22.0Columbia endomembrane-localized small heat shock proteinO.I.H.G.S.X.
0.7687.4At5g25450832619ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;MPFOO.I.H.G.S.X.
0.7385.5At5g52640835341ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage