Co-expression analysis

Gene ID Os03g0248200
Gene name
Homology with ArabidopsisSimilar to At3g26180: CYP71B20 (HF=9e-1)
Module size 24 genes
NF 0.33
%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.70.88Os03g0248200AK070050.1-Cytochrome P450 family protein9e-1At3g26180CYP71B20O.I.H.G.S.X.
0.5978.00.91Os01g0792400AK062797.1-Photosystem I assembly protein ycf42e-53Atcg00520-O.I.H.G.S.X.
0.5676.30.89Os01g0770100NM_191409.1-Protein of unknown function DUF1298 domaincontaining protein9e-1At3g49200unknown proteinO.I.H.G.S.X.
0.5269.60.90Os10g0527100BI795990-Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV)2e+0At5g15850COL1 (constans-like 1)O.I.H.G.S.X.
0.5068.00.91Os06g0598500AK058623.1-Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit)0Atcg00490-O.I.H.G.S.X.
0.4863.70.92Os01g0749400AK067731.1-Glycosyl transferase, family 20 domain containingprotein2e-12At1g06410ATTPS7O.I.H.G.S.X.
0.4558.80.91Os04g0235600CR291556-ATP synthase B chain (EC 3.6.3.14) (Subunit I)2e-42Atcg00130-O.I.H.G.S.X.
0.4355.40.92Os06g0155600AK101138.1-Peptidase S16, lon protease family protein1e+0At3g10420sporulation protein-relatedO.I.H.G.S.X.
0.4152.40.92Os12g0283900AK106931.1-Protein prenyltransferase domain containingprotein2e-11At3g46610pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3846.90.92Os11g0642800AK068792.1-Glutathione synthetase5e-9At5g27380GSH2 (GLUTATHIONE SYNTHETASE 2)O.I.H.G.S.X.
0.3338.80.94Os05g0243200AK066379.1-Ribosomal protein L131e-1At1g49310unknown proteinO.I.H.G.S.X.
0.3134.50.94Os02g0469900AK065847.1-HMG1/2 (high mobility group) box family protein6e-2At1g76110high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.3032.70.90Os04g0585200AK099753.1-Glutamate receptor 3.3 precursor (Ligand-gated ionchannel 3.3)4e-7At4g35290GLUR2 (GLUTAMATE RECEPTOR 2)O.I.H.G.S.X.
0.2931.10.89Os10g0370700NM_196115.1-Nitrate transporter (Fragment)5e-2At1g62200proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.2831.10.93Os01g0715000AK120627.1-The start codon is not identified.6e-8At5g20220zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.2727.50.90Os01g0935600AK106484.1-Glycoside transferase, six-hairpin domaincontaining protein5e-2At4g03200catalyticO.I.H.G.S.X.
0.2727.50.93Os01g0390400AK106834.1-Nucleic acid-binding OB-fold domain containingprotein4e-16At4g27340Met-10+ like family proteinO.I.H.G.S.X.
0.2727.50.91Os02g0728100AK070290.1-Peptidase S49, SppA 67 kDa type family protein1e-19At1g73990SPPAO.I.H.G.S.X.
0.2219.40.92Os01g0218700AK064992.1-Sugar transporter superfamily protein2e-15At1g54350ABC transporter family proteinO.I.H.G.S.X.
0.2117.90.91Os01g0692300AK120588.1-Hypothetical protein3e-1At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.1915.10.92Os08g0292600AK121304.1-Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein4e-1At1g19990unknown proteinO.I.H.G.S.X.
0.1712.60.92Os09g0248000AK120327.1-Conserved hypothetical protein1e-7At2g03800GEK1 (GEKO1)O.I.H.G.S.X.
0.1510.30.92Os01g0580000AK121186.1-Esterase/lipase/thioesterase domain containingprotein4e+0At5g21950hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.138.20.92Os06g0104000AK068490.1-Conserved hypothetical protein5e-3At2g46915unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
20.799.2GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.197.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.697.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0741GO:0006465The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.Link to AmiGO
0.0711GO:0006750The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.Link to AmiGO
0.0541GO:0005992The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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