CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0248000

Gene name
Homology with Arabidopsis Similar to At2g31260: APG9 (autophagy 9) (HF=3e-5)

Module size 8 genes

NF 0.42

%ile 52.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.94 Os03g0248000 AK070612.1 - Autophagy protein Apg9 family protein 3e-5 At2g31260 APG9 (autophagy 9) O.I. H.G. S.X.
0.50 68.0 0.95 Os02g0719800 CR278715 - - 9e-1 At1g17350 auxin-induced-related / indole-3-acetic acid induced-related O.I. H.G. S.X.
0.47 62.3 0.95 Os01g0958700 NM_189338.1 - Membrane attack complexcomponent/perforin/complement C9 family protein 2e-20 At4g24290 - O.I. H.G. S.X.
0.47 62.3 0.95 Os01g0261100 NM_187954.1 - Zn-finger, RING domain containing protein 1e-2 At1g19680 protein binding / zinc ion binding O.I. H.G. S.X.
0.43 55.4 0.96 Os01g0825700 AK070492.1 - VHS2 protein (Fragment) 1e-6 At1g76970 VHS domain-containing protein / GAT domain-containing protein O.I. H.G. S.X.
0.38 46.9 0.95 Os04g0643600 AK105170.1 - Cyclic nucleotide-gated channel C (Fragment) 9e-9 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) O.I. H.G. S.X.
0.32 36.3 0.96 Os08g0430000 AK068194.1 - Conserved hypothetical protein 2e-1 At1g12630 DNA binding / transcription activator/ transcription factor O.I. H.G. S.X.
0.24 22.4 0.95 Os03g0307800 AF407010.1 - Enhancer of zeste protein 4e-29 At4g02020 SWN (SWINGER) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.0 97.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.9 97.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.4 96.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.054 1 GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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