CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0241300

Gene name
Homology with Arabidopsis Similar to At3g49010: ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) (HF=1e+0)

Module size 8 genes

NF 0.44

%ile 56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 69.6 0.91 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) O.I. H.G. S.X.
0.71 89.6 0.92 Os03g0402800 AK061842.1 - ZIM domain containing protein 2e+0 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) O.I. H.G. S.X.
0.67 87.2 0.92 Os07g0685700 AB074972.1 - Ethylene insensitive 3 family protein 2e-2 At1g56170 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) O.I. H.G. S.X.
0.47 62.3 0.92 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.46 60.9 0.92 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) O.I. H.G. S.X.
0.42 53.9 0.92 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.
0.36 44.0 0.93 Os03g0187600 AK068057.1 - GRAM domain containing protein 6e-1 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.23 21.2 0.92 Os04g0584600 AB042550.1 - Calcium dependent protein kinase 3e-44 At2g17290 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
16.9 98.8 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
15.5 98.7 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
10.2 98.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.1 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.037 1 GO:0006470 The process of removing one or more phosphoric residues from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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