Co-expression analysis

Gene ID Os03g0239300
Gene name
Homology with ArabidopsisSimilar to At1g66140: ZFP4 (ZINC FINGER PROTEIN 4) (HF=4e-2)
Module size 8 genes
NF 0.09
%ile 6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8295.00.89Os03g0239300AK068149.1-Zn-finger, C2H2 type domain containing protein4e-2At1g66140ZFP4 (ZINC FINGER PROTEIN 4)O.I.H.G.S.X.
0.4051.10.91Os01g0299500AK065650.1-Hypothetical protein2e-1At4g18692unknown proteinO.I.H.G.S.X.
0.3338.80.90Os10g0417800AK119634.1-Uncharacterized plant-specific protein DUF506domain containing protein5e-2At2g23320WRKY15O.I.H.G.S.X.
0.1611.30.90Os03g0830900AK066720.1-Lipase, class 3 family protein1e-12At4g16070lipase class 3 family proteinO.I.H.G.S.X.
0.105.70.91Os12g0165700CB663072-Transcription factors TFIIS, elongin A, CRSP70,conserved domain containing protein2e-1At5g09850transcription elongation factor-relatedO.I.H.G.S.X.
0.073.70.92Os04g0591100AK069139.1-Protein of unknown function DUF597 family protein3e-3At4g17900zinc-binding family proteinO.I.H.G.S.X.
0.073.70.91Os09g0514400AK060892.1-Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alphasubunit) (Ras proteins prenyltransferase alpha)(FTase-alpha) (Type I protein geranyl-geranyltransferasealpha subunit) (GGTase-I-alpha)7e-4At3g59380FTA (FARNESYLTRANSFERASE A)O.I.H.G.S.X.
0.021.00.91Os03g0100900AK103335.1-Eukaryotic protein of unknown function DUF862family protein7e-4At4g17486unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.199.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.998.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.597.5GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1671GO:0018346The covalent attachment of a prenyl moiety to a protein amino acid.Link to AmiGO
0.0431GO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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