Co-expression analysis

Gene ID Os03g0236400
Gene name
Homology with ArabidopsisSimilar to At3g58510: DEAD box RNA helicase, putative (RH11) (HF=1e-1)
Module size 6 genes
NF 0.61
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os03g0236400NM_184716.1--1e-1At3g58510DEAD box RNA helicase, putative (RH11)O.I.H.G.S.X.
0.6787.21.00Os04g05916009632.m04880--3e+0At4g08874-O.I.H.G.S.X.
0.6181.21.00Os05g04505009633.m03493--1e+0At2g28510Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.5978.00.99Os02g0118800XM_354499.1-NBS-LRR protein (Fragment)3e+0At5g14330unknown proteinO.I.H.G.S.X.
0.5573.71.00Os06g03664009634.m02590--5e+0At5g27670HTA7 (HISTONE H2A 7)O.I.H.G.S.X.
0.3541.71.00Os10g0173200NM_195093.1--4e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.298.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.098.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.098.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.098.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.698.5GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.298.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.298.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.898.4GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.898.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006094The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage