Co-expression analysis

Gene ID Os03g0224300
Gene name
Homology with ArabidopsisSimilar to At1g68020: ATTPS6 (HF=7e-9)
Module size 6 genes
NF 0.10
%ile 7.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.95Os03g0224300AK100541.1-Glycosyl transferase, family 20 domain containingprotein7e-9At1g68020ATTPS6O.I.H.G.S.X.
0.6079.70.97Os01g0775600AK122081.1-Lissencephaly type-1-like homology motif domaincontaining protein6e-1At1g06060RanBPM-relatedO.I.H.G.S.X.
0.4051.10.97Os07g0546100AK100024.1-Conserved hypothetical protein2e-2At1g11480eukaryotic translation initiation factor-relatedO.I.H.G.S.X.
0.2931.10.97Os01g0920400AK073965.1-Dynamin family protein1e-13At4g33650DRP3A (DYNAMIN-RELATED PROTEIN 3A)O.I.H.G.S.X.
0.149.30.97Os10g0470900AK059172.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-1At4g31430unknown proteinO.I.H.G.S.X.
0.031.40.95Os06g0300800AK111728.1-The start codon is not identified.2e-6At3g13290VCR (VARICOSE-RELATED)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.297.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.496.8GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.396.7GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.296.7GSM174885B FR13 3 dpi rep 1 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1051GO:0005992The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.Link to AmiGO
0.0571GO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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