Co-expression analysis

Gene ID Os03g0221200
Gene name
Homology with ArabidopsisSimilar to At3g25900: HMT-1 (HF=2e-7)
Module size 8 genes
NF 0.08
%ile 6.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4051.10.82Os03g0221200AK068002.1-Homocysteine S-methyltransferase 1 (EC 2.1.1.10)(S- methylmethionine:homocysteine methyltransferase 1)(SMM:Hcy S- methyltransferase 1) (ZmHMT-1)2e-7At3g25900HMT-1O.I.H.G.S.X.
0.5068.00.83Os01g0167400AB051107.1-Protein synthesis inhibitor II (EC 3.2.2.22)(Ribosome-inactivating protein II) (rRNA N-glycosidase)7e-1At5g59220protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3644.00.87Os05g0593000AK064253.1-Conserved hypothetical protein8e-4At4g29780unknown proteinO.I.H.G.S.X.
0.2727.50.84Os06g0700300AK099967.1-Hypothetical protein7e+0At5g62770unknown proteinO.I.H.G.S.X.
0.149.30.84Os01g0607200AK105656.1-Amino acid permease subfamily protein1e-21At2g01170BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)O.I.H.G.S.X.
0.063.00.84Os11g0172100BU672886-Pectinesterase family protein1e+0At3g19600phosphoprotein phosphataseO.I.H.G.S.X.
0.031.40.84Os01g0976300AK111354.1-Heavy metal transport/detoxification proteindomain containing protein1e-1At5g61412unknown proteinO.I.H.G.S.X.
0.021.00.84Os12g05119009640.m03182--2e+0At3g19910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.199.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
23.099.3GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.598.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.998.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.798.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.598.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1181GO:0016042The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.Link to AmiGO
0.0831GO:0017148Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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