CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0221200

Gene name
Homology with Arabidopsis Similar to At3g25900: HMT-1 (HF=2e-7)

Module size 8 genes

NF 0.08

%ile 6.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 51.1 0.82 Os03g0221200 AK068002.1 - Homocysteine S-methyltransferase 1 (EC 2.1.1.10)(S- methylmethionine:homocysteine methyltransferase 1)(SMM:Hcy S- methyltransferase 1) (ZmHMT-1) 2e-7 At3g25900 HMT-1 O.I. H.G. S.X.
0.50 68.0 0.83 Os01g0167400 AB051107.1 - Protein synthesis inhibitor II (EC 3.2.2.22)(Ribosome-inactivating protein II) (rRNA N-glycosidase) 7e-1 At5g59220 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.36 44.0 0.87 Os05g0593000 AK064253.1 - Conserved hypothetical protein 8e-4 At4g29780 unknown protein O.I. H.G. S.X.
0.27 27.5 0.84 Os06g0700300 AK099967.1 - Hypothetical protein 7e+0 At5g62770 unknown protein O.I. H.G. S.X.
0.14 9.3 0.84 Os01g0607200 AK105656.1 - Amino acid permease subfamily protein 1e-21 At2g01170 BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) O.I. H.G. S.X.
0.06 3.0 0.84 Os11g0172100 BU672886 - Pectinesterase family protein 1e+0 At3g19600 phosphoprotein phosphatase O.I. H.G. S.X.
0.03 1.4 0.84 Os01g0976300 AK111354.1 - Heavy metal transport/detoxification proteindomain containing protein 1e-1 At5g61412 unknown protein O.I. H.G. S.X.
0.02 1.0 0.84 Os12g0511900 9640.m03182 - - 2e+0 At3g19910 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.1 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
23.0 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0016042 The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
0.083 1 GO:0017148 Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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