Co-expression analysis

Gene ID Os03g0214200
Gene name
Homology with ArabidopsisSimilar to At1g13740: AFP2 (ABI FIVE BINDING PROTEIN 2) (HF=5e-2)
Module size 7 genes
NF 0.12
%ile 9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4660.90.83Os03g0214200AK068799.1-Hypothetical protein5e-2At1g13740AFP2 (ABI FIVE BINDING PROTEIN 2)O.I.H.G.S.X.
0.3134.50.83Os01g0846300AK065949.1-Protein phpsphatase 2C (PP2C) (EC 3.1.3.16)9e-1At5g59220protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2219.40.84Os04g0605500AK120057.1-Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8)3e-30At3g21180ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)O.I.H.G.S.X.
0.2219.40.89Os01g0583100CA757691-Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C)(Abscisic acid- insensitive 2)2e-6At1g72770HAB1 (HOMOLOGY TO ABI1)O.I.H.G.S.X.
0.094.90.83Os01g0783200AK102590.1-Diacylglycerol kinase2e-9At2g20900diacylglycerol kinase, putativeO.I.H.G.S.X.
0.063.00.84Os01g0151600AK063435.1-Conserved hypothetical protein9e-10At5g59960unknown proteinO.I.H.G.S.X.
0.063.00.84Os02g0313700AK072366.1-C2 domain containing protein4e-4At1g53590NTMC2T6.1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.698.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.796.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.396.1GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.396.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.196.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.795.6GSM4094339311_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
3.695.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.695.5GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.595.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1181GO:0007205The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.Link to AmiGO
0.0561GO:0006812The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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