CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0214200

Gene name
Homology with Arabidopsis Similar to At1g13740: AFP2 (ABI FIVE BINDING PROTEIN 2) (HF=5e-2)

Module size 7 genes

NF 0.12

%ile 9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.83 Os03g0214200 AK068799.1 - Hypothetical protein 5e-2 At1g13740 AFP2 (ABI FIVE BINDING PROTEIN 2) O.I. H.G. S.X.
0.31 34.5 0.83 Os01g0846300 AK065949.1 - Protein phpsphatase 2C (PP2C) (EC 3.1.3.16) 9e-1 At5g59220 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.22 19.4 0.84 Os04g0605500 AK120057.1 - Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8) 3e-30 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) O.I. H.G. S.X.
0.22 19.4 0.89 Os01g0583100 CA757691 - Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C)(Abscisic acid- insensitive 2) 2e-6 At1g72770 HAB1 (HOMOLOGY TO ABI1) O.I. H.G. S.X.
0.09 4.9 0.83 Os01g0783200 AK102590.1 - Diacylglycerol kinase 2e-9 At2g20900 diacylglycerol kinase, putative O.I. H.G. S.X.
0.06 3.0 0.84 Os01g0151600 AK063435.1 - Conserved hypothetical protein 9e-10 At5g59960 unknown protein O.I. H.G. S.X.
0.06 3.0 0.84 Os02g0313700 AK072366.1 - C2 domain containing protein 4e-4 At1g53590 NTMC2T6.1 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.6 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.7 96.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.6 95.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.5 95.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0007205 The initiation of the activity of the inactive enzyme protein kinase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.
0.056 1 GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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