CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0210700

Gene name
Homology with Arabidopsis Similar to At1g17480: IQD7 (IQ-domain 7) (HF=2e+0)

Module size 6 genes

NF 0.77

%ile 97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os03g0210700 AK099456.1 - Hypothetical protein 2e+0 At1g17480 IQD7 (IQ-domain 7) O.I. H.G. S.X.
0.83 95.8 0.96 Os01g0501700 AB050885.1 - OsTATC protein 1e-21 At2g01110 APG2 (ALBINO AND PALE GREEN 2) O.I. H.G. S.X.
0.67 87.2 0.95 Os03g0322600 AK067222.1 - Hypothetical protein 4e-2 At5g22340 unknown protein O.I. H.G. S.X.
0.67 87.2 0.95 Os09g0530000 AK062568.1 - Rhodanese-like domain containing protein 2e-7 At4g27700 rhodanese-like domain-containing protein O.I. H.G. S.X.
0.60 79.7 0.96 Os01g0805200 AK066239.1 - Conserved hypothetical protein 8e-6 At3g17930 unknown protein O.I. H.G. S.X.
0.44 58.1 0.96 Os03g0850600 AK067191.1 - Conserved hypothetical protein 6e-1 At5g42450 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.6 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0009688 The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
0.182 1 GO:0009306 The controlled release of proteins from a cell or group of cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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