CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0208500

Gene name
Homology with Arabidopsis Similar to At5g67330: ATNRAMP4 (HF=1e-12)

Module size 6 genes

NF 0.16

%ile 13.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.93 Os03g0208500 AK065481.1 - Integral membrane protein 1e-12 At5g67330 ATNRAMP4 O.I. H.G. S.X.
0.18 13.7 0.93 Os01g0886000 AK106349.1 - Protein of unknown function DUF179 family protein 7e-1 At3g24100 - O.I. H.G. S.X.
0.17 12.6 0.93 Os08g0179900 AK072550.1 - Conserved hypothetical protein 2e+0 At4g01510 ARV2 O.I. H.G. S.X.
0.12 7.2 0.94 Os03g0728100 AK068717.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 1e-5 At4g07990 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.10 5.7 0.94 Os01g0976700 AK100571.1 - Protein phosphatase 2C-like protein 1e+0 At5g06750 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.10 5.7 0.93 Os12g0612100 AK101614.1 - Hypothetical protein 9e-1 At5g38290 peptidyl-tRNA hydrolase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
28.4 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.0 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.038 1 GO:0006470 The process of removing one or more phosphoric residues from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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