Co-expression analysis

Gene ID Os03g0200800
Gene name
Homology with ArabidopsisSimilar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=5e-35)
Module size 16 genes
NF 0.63
%ile 84.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7591.90.95Os03g0200800AK112007.1--5e-35At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.8896.80.97Os11g0127700AK103742.1-Hypothetical protein2e-1At1g49480RTV1 (related to vernalization1 1)O.I.H.G.S.X.
0.7993.60.97Os05g0593100AK061855.1-Vacuolar ATP synthase subunit C (EC 3.6.3.14)(V-ATPase C subunit) (Vacuolar proton pump C subunit)2e-10At1g12840DET3 (DE-ETIOLATED 3)O.I.H.G.S.X.
0.7993.60.96Os05g0106100AK063178.1-Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14)1e-38At1g19910AVA-P2O.I.H.G.S.X.
0.7491.40.97Os11g0169900U27098.1-Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)(Fragment)4e-63At1g75630AVA-P4O.I.H.G.S.X.
0.6583.80.96Os10g0184300AK058856.1-Hypothetical protein1e-28At4g39080VHA-A3 (VACUOLAR PROTON ATPASE A3)O.I.H.G.S.X.
0.6483.40.97Os04g0660600AK120899.1-ATP synthase subunit H family protein3e-10At5g55290ATP synthase subunit H family proteinO.I.H.G.S.X.
0.6483.40.98Os06g0662000AK071775.1-Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit)0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.5877.00.97Os12g0168900AK071641.1--4e-51At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.5877.00.97Os01g0610100AK059810.1-Vacuolar ATP synthase 21 kDa proteolipid subunit(EC 3.6.3.14) (23-kDa subunit of V-ATPase)4e-23At2g25610H+-transporting two-sector ATPase, C subunit family proteinO.I.H.G.S.X.
0.5777.00.96Os06g0115100AK059160.1--4e+0At5g66005Expressed proteinO.I.H.G.S.X.
0.5471.90.97Os12g0123900AK061862.1-Hypothetical protein3e+0At5g27690heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5471.90.96Os03g0772800AK121608.1-Cytochrome c oxidase, subunit VIa family protein1e-3At4g37830cytochrome c oxidase-relatedO.I.H.G.S.X.
0.5168.70.97Os02g0586400L35845.1-Small GTP binding protein Rab27e-87At4g17170RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)O.I.H.G.S.X.
0.4458.10.97Os08g0112800AK121176.1-Conserved hypothetical protein2e-3At1g08480unknown proteinO.I.H.G.S.X.
0.4152.40.97Os06g0568200AF375052.1-Vacuolar ATPase B subunit4e-111At1g20260hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanismO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.998.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.898.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.798.0GSM1952305d-seedGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
6.997.3GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.297.1GSM154829Root_DMSO-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
6.097.0GSM154832Root_DMSO-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
5.997.0GSM154831Root_DMSO-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in riceLink to GEO
5.897.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.496.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1212GO:0006818The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.Link to AmiGO
0.1181GO:0015988The transport of protons against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport.Link to AmiGO
0.0872GO:0015986The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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