CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0195300

Gene name
Homology with Arabidopsis Similar to At1g77990: AST56 (HF=3e-1)

Module size 6 genes

NF 0.54

%ile 72.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.79 Os03g0195300 AK067353.1 - Low affinity sulphate transporter 3 3e-1 At1g77990 AST56 O.I. H.G. S.X.
0.57 77.0 0.89 Os02g0158300 AU162361 - KpsF/GutQ family protein 5e-13 At3g54690 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein O.I. H.G. S.X.
0.50 68.0 0.90 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.36 44.0 0.89 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein O.I. H.G. S.X.
0.33 38.8 0.90 Os03g0294800 AK066380.1 - Protein kinase domain containing protein 4e-3 At2g40270 protein kinase family protein O.I. H.G. S.X.
0.31 34.5 0.89 Os12g0126000 AK067521.1 - Multi antimicrobial extrusion protein MatE familyprotein 6e-5 At1g33110 MATE efflux family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.0 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.5 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0008272 The directed movement of sulfate into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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