CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0191900

Gene name
Homology with Arabidopsis Similar to At1g71130: AP2 domain-containing transcription factor, putative (HF=4e-2)

Module size 7 genes

NF 0.35

%ile 39.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.77 Os03g0191900 9631.m00866 - AP2 domain family transcription factor homolog(AP2 domain transcription factor) (ABI4:abscisicacid-insensitive 4 ) (ABI4) 4e-2 At1g71130 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.48 63.7 0.78 Os09g0455300 AK070458.1 - Symbiotic ammonium transporter 1e-5 At3g50330 HEC2 (HECATE 2) O.I. H.G. S.X.
0.46 60.9 0.81 Os07g0686600 AK108527.1 - VQ domain containing protein 6e-1 At2g40220 ABI4 (ABA INSENSITIVE 4) O.I. H.G. S.X.
0.43 55.4 0.80 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - O.I. H.G. S.X.
0.27 27.5 0.85 Os01g0846300 AK065949.1 - Protein phpsphatase 2C (PP2C) (EC 3.1.3.16) 9e-1 At5g59220 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.18 13.7 0.79 Os05g0499800 AK103146.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-2 At1g30530 UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1) O.I. H.G. S.X.
0.15 10.3 0.82 Os03g0125100 9631.m00248 - Beta-carotene hydroxylase 1e-11 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.2 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.5 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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