Co-expression analysis

Gene ID Os03g0189100
Gene name
Homology with ArabidopsisSimilar to At5g02150: binding (HF=2e+0)
Module size 7 genes
NF 0.69
%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.91Os03g0189100AK066877.1-Conserved hypothetical protein2e+0At5g02150bindingO.I.H.G.S.X.
0.8094.60.93Os01g0934100AK100995.1-C2 domain containing protein7e-1At5g62720integral membrane HPP family proteinO.I.H.G.S.X.
0.6787.20.93Os03g0764100AF332876.1-Conserved hypothetical protein6e-1At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.6787.20.93Os05g0128200AK099898.1-Transposable element Mu1 sequence3e-6At5g07500PEI1O.I.H.G.S.X.
0.6079.70.93Os05g0343400AK121190.1-WRKY transcription factor 53 (Transcription factorWRKY12)3e-7At5g07100WRKY26O.I.H.G.S.X.
0.5068.00.90Os03g0787000AK065950.1-Syntaxin1e-2At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.4458.10.93Os01g05826009629.m03821-Conserved hypothetical protein7e-5At4g29780unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.999.0GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.097.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.597.5GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.196.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.196.6GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.096.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.896.5GSM173091Rice OsSRT1 RNAi transgenic line LM1GSE7197Down-regulation of OsSRT1 induces DNA fragmentation and cell death in riceLink to GEO
4.696.3GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.596.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.496.2GSM173086Rice MH63 Control1GSE7197Down-regulation of OsSRT1 induces DNA fragmentation and cell death in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0201GO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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