Co-expression analysis

Gene ID	Os03g0186600
Gene name
Homology with Arabidopsis	Similar to At2g22540: SVP (SHORT VEGETATIVE PHASE) (HF=1e-4)
Module size	6 genes
NF	0.09
%ile	6.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.89	Os03g0186600	AY345222.1	-	Transcription factor, MADS-box domain containingprotein	1e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.95	Os01g0178200	NM_189524.1	-	Protein of unknown function DUF92 family protein	1e+0	At2g16340	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	0.95	Os01g0749900	AK103588.1	-	Conserved hypothetical protein	3e-13	At1g06470	phosphate translocator-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	0.94	Os03g0843600	AK068216.1	-	DMI1 protein	7e-3	At5g49960	binding / catalytic	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	0.95	Os04g0563100	9632.m04591	-	Protein of unknown function family protein	4e-5	At4g38360	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1.0	0.94	Os06g0308900	AK069264.1	-	Zinc finger DHHC domain containing protein 15	1e-9	At3g18620	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.2	GSM195220	stigma 3, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
9.8	98.0	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
9.4	97.9	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
8.5	97.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.8	97.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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