Co-expression analysis

Gene ID Os03g0181100
Gene name
Homology with ArabidopsisSimilar to At3g59370: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.47
%ile 60.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.91Os03g0181100AK120087.1-ZIM domain containing protein2e+0At3g59370unknown proteinO.I.H.G.S.X.
0.6181.20.88Os10g0391400AK107854.1-ZIM domain containing protein2e+0At3g01700AGP11O.I.H.G.S.X.
0.6181.20.90Os08g0474000AK062882.1-AP2 domain containing protein RAP2.6 (Fragment)1e-4At1g22985AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.5068.00.90Os06g0649000AK106282.1-The start codon is not identified.7e-4At1g80840WRKY40O.I.H.G.S.X.
0.3541.70.87Os03g0676400AK109228.1-VQ domain containing protein1e+0At5g55570unknown proteinO.I.H.G.S.X.
0.2931.10.88Os01g0186900AK120573.1-Hypothetical protein4e-1At3g04310unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.099.3GSM159271Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
15.898.7GSM159272Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
11.898.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.698.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM159191Young inflorescence (P1, upto 3 cm), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
10.498.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.198.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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