Co-expression analysis

Gene ID	Os03g0181100
Gene name
Homology with Arabidopsis	Similar to At3g59370: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.47
%ile	60.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	68.0	0.91	Os03g0181100	AK120087.1	-	ZIM domain containing protein	2e+0	At3g59370	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.88	Os10g0391400	AK107854.1	-	ZIM domain containing protein	2e+0	At3g01700	AGP11	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.90	Os08g0474000	AK062882.1	-	AP2 domain containing protein RAP2.6 (Fragment)	1e-4	At1g22985	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.90	Os06g0649000	AK106282.1	-	The start codon is not identified.	7e-4	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	0.87	Os03g0676400	AK109228.1	-	VQ domain containing protein	1e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.88	Os01g0186900	AK120573.1	-	Hypothetical protein	4e-1	At3g04310	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.0	99.3	GSM159271	Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
15.8	98.7	GSM159272	Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.8	98.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.6	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM159191	Young inflorescence (P1, upto 3 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
10.4	98.1	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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