CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0180900

Gene name
Homology with Arabidopsis Similar to At3g22275: unknown protein (HF=1e-1)

Module size 7 genes

NF 0.51

%ile 67.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.90 Os03g0180900 AK073589.1 - ZIM domain containing protein 1e-1 At3g22275 unknown protein O.I. H.G. S.X.
0.56 76.3 0.90 Os03g0241900 AK111568.1 - Senescence-associated protein 12 1e+0 At1g44990 unknown protein O.I. H.G. S.X.
0.50 68.0 0.91 Os01g0159300 AK073728.1 - Zn-finger, RING domain containing protein 1e+0 At3g61370 unknown protein O.I. H.G. S.X.
0.46 60.9 0.90 Os01g0667900 AK105335.1 - Glutaredoxin domain containing protein 2e+0 At4g38140 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.40 51.1 0.94 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) O.I. H.G. S.X.
0.39 48.3 0.89 Os12g0224000 AK060284.1 - Diacylglycerol kinase 2 (At5g63770) (EC 2.7.1.107) 4e-12 At5g63770 ATDGK2 (Diacylglycerol kinase 2) O.I. H.G. S.X.
0.33 38.8 0.92 Os07g0685700 AB074972.1 - Ethylene insensitive 3 family protein 2e-2 At1g56170 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.8 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.6 99.0 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
18.5 99.0 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
17.0 98.8 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
14.8 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.3 98.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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