CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0180800

Gene name
Homology with Arabidopsis Similar to At2g35960: NHL12 (HF=5e-1)

Module size 18 genes

NF 0.48

%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 91.4 0.81 Os03g0180800 AK070649.1 - ZIM domain containing protein 5e-1 At2g35960 NHL12 O.I. H.G. S.X.
0.74 91.4 0.86 Os06g0649000 AK106282.1 - The start codon is not identified. 7e-4 At1g80840 WRKY40 O.I. H.G. S.X.
0.74 91.4 0.85 Os08g0474000 AK062882.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-4 At1g22985 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.73 91.1 0.86 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein O.I. H.G. S.X.
0.72 89.8 0.86 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 O.I. H.G. S.X.
0.60 79.7 0.85 Os03g0676400 AK109228.1 - VQ domain containing protein 1e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.58 77.0 0.86 Os04g0301500 AB040744.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 7e-1 At3g02670 proline-rich family protein O.I. H.G. S.X.
0.58 77.0 0.89 Os03g0180900 AK073589.1 - ZIM domain containing protein 1e-1 At3g22275 unknown protein O.I. H.G. S.X.
0.50 68.0 0.88 Os02g0165100 AK066645.1 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) O.I. H.G. S.X.
0.48 63.7 0.87 Os01g0186900 AK120573.1 - Hypothetical protein 4e-1 At3g04310 unknown protein O.I. H.G. S.X.
0.47 62.3 0.86 Os10g0521900 AK061038.1 - Rhomboid-like protein family protein 1e-8 At5g07250 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3) O.I. H.G. S.X.
0.41 52.4 0.87 Os04g0517100 AF467733.1 - Myb protein 1e-5 At3g12820 AtMYB10 (myb domain protein 10) O.I. H.G. S.X.
0.40 51.1 0.86 Os03g0767000 AB116527.1 - Allene oxide synthase (EC 4.2.1.92) 1e+0 At3g03550 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.39 48.3 0.88 Os03g0285800 AF332873.1 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.
0.34 40.0 0.86 Os02g0653900 AK104793.1 - - 6e-2 At4g16820 lipase class 3 family protein O.I. H.G. S.X.
0.29 31.1 0.86 Os02g0205500 AK067907.1 - Naringenin-chalcone synthase family protein 7e-5 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) O.I. H.G. S.X.
0.29 31.1 0.86 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) O.I. H.G. S.X.
0.29 31.1 0.86 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 98.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.6 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.035 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
0.012 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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