Co-expression analysis

Gene ID Os03g0178000
Gene name
Homology with ArabidopsisSimilar to At1g07930: elongation factor 1-alpha / EF-1-alpha (HF=1e-54)
Module size 6 genes
NF 0.08
%ile 6.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.88Os03g0178000D10400.1--1e-54At1g07930elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.2321.20.88Os03g0859700CB669414-RuBisCO subunit binding-protein alpha subunit,chloroplast precursor (60 kDa chaperonin alpha subunit)(CPN-60 alpha) (Fragment)1e-16At2g28000CPN60A (CHAPERONIN-60ALPHA)O.I.H.G.S.X.
0.084.20.96Os02g0220500AK104946.1-Elongation factor 1-gamma (EF-1-gamma) (eEF-1Bgamma)1e-52At1g57720elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.
0.052.50.95Os05g0455800AK064864.1-Protein of unknown function DUF649 domaincontaining protein1e-2At5g56140KH domain-containing proteinO.I.H.G.S.X.
0.042.00.96Os10g0411800AK059434.1-Ribosomal protein S177e-9At5g0480040S ribosomal protein S17 (RPS17D)O.I.H.G.S.X.
0.031.40.96Os08g0116500AK060433.1-60S acidic ribosomal protein P1 (L12)1e-3At2g2772060S acidic ribosomal protein P2 (RPP2A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.199.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.897.3GSM281585Rice Zhonghua11, biological rep3GSE11175Comparison of transcriptome profile between wild-type and dst mutant plantsLink to GEO
6.497.2GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.496.8GSM281588Rice mutant dst, biological rep3GSE11175Comparison of transcriptome profile between wild-type and dst mutant plantsLink to GEO
5.296.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.196.6GSM281584Rice Zhonghua11, biological rep2GSE11175Comparison of transcriptome profile between wild-type and dst mutant plantsLink to GEO
3.094.6GSM281586Rice mutant dst, biological rep1GSE11175Comparison of transcriptome profile between wild-type and dst mutant plantsLink to GEO
2.894.3GSM67060IR29 salt stressed replicate 1GSE3053Rice salt expressionLink to GEO
2.794.1GSM281587Rice mutant dst, biological rep2GSE11175Comparison of transcriptome profile between wild-type and dst mutant plantsLink to GEO
2.493.3GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0651GO:0006414The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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