Co-expression analysis

Gene ID Os03g0177500
Gene name
Homology with ArabidopsisSimilar to At1g07920: elongation factor 1-alpha / EF-1-alpha (HF=0)
Module size 6 genes
NF 0.70
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os03g0177500D63583.1-EF-1 alpha0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.6787.20.98Os03g0177400AK103738.1-EF-1 alpha0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.6787.20.98Os11g0660500D12626.1-Translationally controlled tumor protein familyprotein2e-13At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.6787.20.99Os02g0519900AK100313.1-Elongation factor EF-2 (Fragment)0At1g56070LOS1O.I.H.G.S.X.
0.4458.10.99Os03g0670700AK119242.1-Glycine-rich RNA-binding protein GRP1A2e-6At4g39260GR-RBP8O.I.H.G.S.X.
0.4051.10.99Os12g0567700AK070647.1--5e-75At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.596.8GSM262020Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
5.196.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.996.5GSM262021Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
4.696.3GSM262009IAC165, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
4.696.3GSM262008IAC165, 11 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
4.296.0GSM262018Nipponbare, 11 days after mock-infection, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
4.296.0GSM262004IAC165, 4 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
3.695.5GSM262019Nipponbare, 11 days after mock-infection, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
3.695.5GSM262005IAC165, 4 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
3.695.5GSM262007IAC165, 11 days after mock-infection, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0651GO:0006414The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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