CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0159600

Gene name
Homology with Arabidopsis Similar to At3g14200: DNAJ heat shock N-terminal domain-containing protein (HF=1e+1)

Module size 6 genes

NF 0.71

%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os03g0159600 AK106743.1 - Rab28 protein 1e+1 At3g14200 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.71 89.6 0.96 Os05g0140800 AK110652.1 - Glucose/ribitol dehydrogenase family protein 7e-1 At3g05260 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.67 87.2 0.97 Os05g0569500 AF049892.1 - - 6e-10 At1g05510 - O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0277500 AK063650.1 - Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein 2e+1 At4g38260 unknown protein O.I. H.G. S.X.
0.61 81.2 0.96 Os01g0303300 9629.m01932 - Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein 5e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.50 68.0 0.93 Os09g0433900 AK107237.1 - Alanine aminotransferase 4e-3 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.6 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.8 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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