CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0152000

Gene name
Homology with Arabidopsis Similar to At5g24580: copper-binding family protein (HF=4e-2)

Module size 7 genes

NF 0.49

%ile 64.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.87 Os03g0152000 AK102357.1 - - 4e-2 At5g24580 copper-binding family protein O.I. H.G. S.X.
0.67 87.2 0.92 Os01g0186900 AK120573.1 - Hypothetical protein 4e-1 At3g04310 unknown protein O.I. H.G. S.X.
0.53 71.3 0.88 Os02g0134200 AK108331.1 - Conserved hypothetical protein 5e-1 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) O.I. H.G. S.X.
0.46 60.9 0.89 Os04g0517100 AF467733.1 - Myb protein 1e-5 At3g12820 AtMYB10 (myb domain protein 10) O.I. H.G. S.X.
0.42 53.9 0.87 Os03g0107700 D64038.1 - EL2 protein 4e-1 At5g39540 - O.I. H.G. S.X.
0.40 51.1 0.88 Os07g0680600 AK059307.1 - Conserved hypothetical protein 5e+0 At5g18200 UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase O.I. H.G. S.X.
0.33 38.8 0.90 Os06g0683400 AK111852.1 - EF-hand Ca2+-binding protein CCD1 1e+0 At5g28630 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.6 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
14.0 98.5 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
13.4 98.5 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
11.8 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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