CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0150200

Gene name
Homology with Arabidopsis Similar to At1g06160: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) (HF=8e-2)

Module size 32 genes

NF 0.27

%ile 26.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.96 Os03g0150200 AY339376.1 - Ethylene-responsive element binding protein 8e-2 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) O.I. H.G. S.X.
0.41 52.4 0.98 Os01g0168900 NM_184540.1 - - 3e-5 At3g13540 ATMYB5 (MYB DOMAIN PROTEIN 5) O.I. H.G. S.X.
0.34 40.0 0.99 Os07g0106850 NM_194245.1 - - 4e-1 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) O.I. H.G. S.X.
0.34 40.0 0.98 Os01g0245565 NM_188753.1 - - 1e+1 At5g13080 WRKY75 O.I. H.G. S.X.
0.34 40.0 0.98 Os06g0491500 9634.m02839 - - 7e-1 At5g14380 AGP6 (Arabinogalactan proteins 6) O.I. H.G. S.X.
0.31 34.5 0.98 Os06g0110300 XM_353939.1 - - 5e-1 At5g67490 unknown protein O.I. H.G. S.X.
0.31 34.5 0.98 Os04g0211600 9632.m01218 - - 6e-1 At1g48145 unknown protein O.I. H.G. S.X.
0.30 32.7 0.98 Os08g0160600 AK106763.1 - Conserved hypothetical protein 7e-2 At5g11600 unknown protein O.I. H.G. S.X.
0.29 31.1 0.98 Os03g0683600 9631.m04664 - - 2e-1 At1g75550 glycine-rich protein O.I. H.G. S.X.
0.29 31.1 0.98 Os03g0790400 9631.m05657 - - 3e+0 At2g36210 auxin-responsive family protein O.I. H.G. S.X.
0.28 31.1 0.98 Os05g0200600 9633.m00978 - - 8e+0 At4g36515 unknown protein O.I. H.G. S.X.
0.28 31.1 0.98 Os10g0395700 9638.m02169 - - 5e-2 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.28 31.1 0.98 Os03g0762200 AK107203.1 - Hypothetical protein 5e-5 At5g67400 peroxidase 73 (PER73) (P73) (PRXR11) O.I. H.G. S.X.
0.28 31.1 0.98 Os04g0273000 9632.m01875 - - 5e+0 Atmg00810 - O.I. H.G. S.X.
0.27 27.5 0.98 Os10g0558400 9638.m03716 - 2OG-Fe(II) oxygenase domain containing protein 4e-8 At1g55290 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.26 25.6 0.99 Os03g0448200 9631.m03290 - - 8e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) O.I. H.G. S.X.
0.25 24.1 0.99 Os08g0491500 9636.m03862 - - 3e+0 At2g18050 HIS1-3 (HISTONE H1-3) O.I. H.G. S.X.
0.24 22.4 0.98 Os07g0579500 9635.m03900 - - 1e+1 At5g06020 self-incompatibility protein-related O.I. H.G. S.X.
0.22 19.4 0.98 Os12g0192400 9640.m00837 - - 7e+0 At4g10450 60S ribosomal protein L9 (RPL90D) O.I. H.G. S.X.
0.22 19.4 0.99 Os06g0675300 AK109610.1 - Conserved hypothetical protein 1e+0 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) O.I. H.G. S.X.
0.22 19.4 0.98 Os02g0640100 9630.m04095 - - 6e-1 At3g44590 60S acidic ribosomal protein P2 (RPP2D) O.I. H.G. S.X.
0.21 17.9 0.98 Os03g0581500 9631.m03690 - - 8e-4 At5g24310 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) O.I. H.G. S.X.
0.21 17.9 0.98 Os09g0441050 9637.m02355 - - 2e-1 At3g30350 unknown protein O.I. H.G. S.X.
0.21 17.9 0.99 Os10g0351600 9638.m01756 - Tapetum specific protein (Tapetum-specificendoxylanase) 4e-3 At4g38300 glycosyl hydrolase family 10 protein O.I. H.G. S.X.
0.21 17.9 0.99 Os10g0514300 9638.m03311 - - 1e-2 At1g64900 CYP89A2 (CYTOCHROME P450 89A2) O.I. H.G. S.X.
0.20 16.5 0.98 Os10g0419700 9638.m02403 - - 3e-1 At1g78410 VQ motif-containing protein O.I. H.G. S.X.
0.20 16.5 0.98 Os03g0163800 9631.m00609 - - 5e-1 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.19 15.1 0.98 Os05g0147600 AK111304.1 - Protein prenyltransferase domain containingprotein 6e-1 At3g05340 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.18 13.7 0.98 Os04g0533700 9632.m04337 - - 2e+0 At3g53880 aldo/keto reductase family protein O.I. H.G. S.X.
0.17 12.6 0.99 Os05g0203400 9633.m00999 - Conserved hypothetical protein 3e-1 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.16 11.3 0.98 Os04g0649400 AJ556181.1 - Homeobox domain containing protein 4e-10 At2g17950 WUS (WUSCHEL) O.I. H.G. S.X.
0.16 11.3 0.99 Os03g0712000 9631.m04923 - - 3e+0 At3g46300 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.96	Os03g0150200	AY339376.1	-	Ethylene-responsive element binding protein	8e-2	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os01g0168900	NM_184540.1	-	-	3e-5	At3g13540	ATMYB5 (MYB DOMAIN PROTEIN 5)	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os07g0106850	NM_194245.1	-	-	4e-1	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	O.I.	H.G.	S.X.
0.34	40.0	0.98	Os01g0245565	NM_188753.1	-	-	1e+1	At5g13080	WRKY75	O.I.	H.G.	S.X.
0.34	40.0	0.98	Os06g0491500	9634.m02839	-	-	7e-1	At5g14380	AGP6 (Arabinogalactan proteins 6)	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os06g0110300	XM_353939.1	-	-	5e-1	At5g67490	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os04g0211600	9632.m01218	-	-	6e-1	At1g48145	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os08g0160600	AK106763.1	-	Conserved hypothetical protein	7e-2	At5g11600	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os03g0683600	9631.m04664	-	-	2e-1	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os03g0790400	9631.m05657	-	-	3e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.
0.28	31.1	0.98	Os05g0200600	9633.m00978	-	-	8e+0	At4g36515	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	0.98	Os10g0395700	9638.m02169	-	-	5e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.
0.28	31.1	0.98	Os03g0762200	AK107203.1	-	Hypothetical protein	5e-5	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	O.I.	H.G.	S.X.
0.28	31.1	0.98	Os04g0273000	9632.m01875	-	-	5e+0	Atmg00810	-	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os10g0558400	9638.m03716	-	2OG-Fe(II) oxygenase domain containing protein	4e-8	At1g55290	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.26	25.6	0.99	Os03g0448200	9631.m03290	-	-	8e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.
0.25	24.1	0.99	Os08g0491500	9636.m03862	-	-	3e+0	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.
0.24	22.4	0.98	Os07g0579500	9635.m03900	-	-	1e+1	At5g06020	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.22	19.4	0.98	Os12g0192400	9640.m00837	-	-	7e+0	At4g10450	60S ribosomal protein L9 (RPL90D)	O.I.	H.G.	S.X.
0.22	19.4	0.99	Os06g0675300	AK109610.1	-	Conserved hypothetical protein	1e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.
0.22	19.4	0.98	Os02g0640100	9630.m04095	-	-	6e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.
0.21	17.9	0.98	Os03g0581500	9631.m03690	-	-	8e-4	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.21	17.9	0.98	Os09g0441050	9637.m02355	-	-	2e-1	At3g30350	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.99	Os10g0351600	9638.m01756	-	Tapetum specific protein (Tapetum-specificendoxylanase)	4e-3	At4g38300	glycosyl hydrolase family 10 protein	O.I.	H.G.	S.X.
0.21	17.9	0.99	Os10g0514300	9638.m03311	-	-	1e-2	At1g64900	CYP89A2 (CYTOCHROME P450 89A2)	O.I.	H.G.	S.X.
0.20	16.5	0.98	Os10g0419700	9638.m02403	-	-	3e-1	At1g78410	VQ motif-containing protein	O.I.	H.G.	S.X.
0.20	16.5	0.98	Os03g0163800	9631.m00609	-	-	5e-1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.
0.19	15.1	0.98	Os05g0147600	AK111304.1	-	Protein prenyltransferase domain containingprotein	6e-1	At3g05340	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.18	13.7	0.98	Os04g0533700	9632.m04337	-	-	2e+0	At3g53880	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.17	12.6	0.99	Os05g0203400	9633.m00999	-	Conserved hypothetical protein	3e-1	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.
0.16	11.3	0.98	Os04g0649400	AJ556181.1	-	Homeobox domain containing protein	4e-10	At2g17950	WUS (WUSCHEL)	O.I.	H.G.	S.X.
0.16	11.3	0.99	Os03g0712000	9631.m04923	-	-	3e+0	At3g46300	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.5 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
28.5	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.1	99.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.7	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.039 1 GO:0006887 A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.
0.039 1 GO:0009225 The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
0.011 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

SF	Genes	GO ID	Process Name
0.039	1	GO:0006887	A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.
0.039	1	GO:0009225	The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
0.011	1	GO:0045449	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os03g0150200
Gene name
Homology with Arabidopsis	Similar to At1g06160: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) (HF=8e-2)
Module size	32 genes
NF	0.27
%ile	26.8

Co-expression analysis

Gene ID Os03g0150200 Gene name Homology with ArabidopsisSimilar to At1g06160: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) (HF=8e-2) Module size 32 genes NF 0.27 %ile 26.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os03g0150200

Gene name
Homology with Arabidopsis Similar to At1g06160: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) (HF=8e-2)

Module size 32 genes

NF 0.27

%ile 26.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays