CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0145000

Gene name
Homology with Arabidopsis Similar to At4g28650: leucine-rich repeat transmembrane protein kinase, putative (HF=1e-4)

Module size 6 genes

NF 0.52

%ile 68.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.94 Os03g0145000 9631.m00434 - Protein kinase domain containing protein 1e-4 At4g28650 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.67 87.2 0.96 Os03g0156300 9631.m00529 - Alpha-expansin OsEXPA20 2e+0 At2g40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) O.I. H.G. S.X.
0.67 87.2 0.96 Os07g0531000 9635.m03425 - - 8e-3 At2g34060 peroxidase, putative O.I. H.G. S.X.
0.46 60.9 0.96 Os06g0112700 9634.m00125 - Myb, DNA-binding domain containing protein 2e-9 At4g22680 MYB85 (myb domain protein 85) O.I. H.G. S.X.
0.38 46.9 0.96 Os01g0634500 NM_192960.1 - - 1e-12 At2g38080 IRX12 (IRREGULAR XYLEM 12) O.I. H.G. S.X.
0.31 34.5 0.95 Os05g0433500 9633.m03337 - - 4e-1 At1g02840 SR1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.9 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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